PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf17839g03002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 272aa MW: 30528.9 Da PI: 5.9356 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.8 | 7.1e-31 | 73 | 130 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDg++WrKYGqK vkgs+fprsYY+Ct+++Cpv+kk+e++ +++v+ei+Y+g Hnh+k Niben101Scf17839g03002.1 73 DDGFTWRKYGQKRVKGSNFPRSYYKCTQQSCPVRKKLECAP-NGQVIEIVYNGAHNHPK 130 8****************************************.***************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-26 | 63 | 130 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.39 | 67 | 131 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.15E-23 | 70 | 130 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-32 | 72 | 130 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-24 | 73 | 129 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MSSLPCRPAV LTIPPGISPA ALLDSPTPIE TNVQRTWNNI EITNKQIPQQ EEFTKKENQF 60 GVFSSSTSPS SSDDGFTWRK YGQKRVKGSN FPRSYYKCTQ QSCPVRKKLE CAPNGQVIEI 120 VYNGAHNHPK TQSIRRPSMD NSYVVREVEE IGQENASVWR NQQFECNKNV SSYRANGLKR 180 TSSASVLTEV SDPMSTNPKS MRMFESAESP ELSSTLTSYD GDDGDWATQE GTFLGDDVNE 240 KKERYSAEPS LLSRKVREPK VVLQVESEID VL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-15 | 73 | 128 | 18 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-15 | 73 | 128 | 18 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791232.1 | 1e-175 | PREDICTED: probable WRKY transcription factor 4 isoform X2 | ||||
TrEMBL | A0A1U7XGN3 | 1e-174 | A0A1U7XGN3_NICSY; probable WRKY transcription factor 4 isoform X2 | ||||
STRING | XP_009791230.1 | 1e-172 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5767 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-31 | WRKY DNA-binding protein 4 |