PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf17719g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 415aa    MW: 45142.1 Da    PI: 5.532
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf17719g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.14.3e-2736132186
                  trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 
                               rWt+qe+l+Li+++r  e+r+rrg+           + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e + ++e
  Niben101Scf17719g00009.1  36 RWTRQEILVLIQGKRVAESRVRRGRtvglelgsgsgQVEPKWASVSSYCKKHGVNRGPVQCRKRWSNLAGDFKKIKEWECGIKEE 120
                               8**********************9778888888888**********************************************999 PP

                  trihelix  75 ssstcpyfdqle 86 
                               s+s +++ ++l+
  Niben101Scf17719g00009.1 121 SESFWVMRNDLR 132
                               9999*9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-436103IPR009057Homeodomain-like
PfamPF138372.6E-1136127No hitNo description
PROSITE profilePS500906.30736104IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MALEPLTLAF DGDSNGGRQQ SVNGADDGNR APRLPRWTRQ EILVLIQGKR VAESRVRRGR  60
TVGLELGSGS GQVEPKWASV SSYCKKHGVN RGPVQCRKRW SNLAGDFKKI KEWECGIKEE  120
SESFWVMRND LRRERKLPGF FDKEVYEILD RGSGGEEMEA GLALALAPAA AVNEPEALFD  180
SGRSAAADEG LFSDFEQSEA GDKDKHMPIP APTPISGINH QKEPASHPDG GSAQEGKKRK  240
RGVTDTDEEA DSLQHQLAKA LERNGLALAL APAAAVNEPE ALFDSGRSAA ADEGLFSDFE  300
QSEAGDKDKH MPIPAPTPIS GINHQKEPAS HPDGGSAQEG KKRKRGVTDT DEEADSLQHQ  360
LAKALERNGN LLSSQLEAQN AHYQLDREQR KDHVNSLIAV LDKLADAMGR IADKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339345GKKRKRG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791338.11e-180PREDICTED: uncharacterized protein LOC104238623 isoform X2
SwissprotQ8VZ202e-84ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A1U7XKC11e-179A0A1U7XKC1_NICSY; uncharacterized protein LOC104238623 isoform X2
STRINGXP_009791337.11e-175(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-82Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]