PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf17122g00007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 227aa MW: 26480.7 Da PI: 5.2955

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf17122g00007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.6	5.7e-20	24	74	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +ft+eq++ Le++F+++ ++ +++ eLA+ lgL+ rqV +WFqNrRa++k Niben101Scf17122g00007.1 24 RFTDEQVKLLESMFKQETKLEPRKKLELARDLGLQPRQVAIWFQNRRARWK 74 7*************************************************9 PP
2	HD-ZIP_I/II	122.5	2.1e-39	23	112	4	93
HD-ZIP_I/II 4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +r+++eqvklLE++F++e+kLep++K elar+Lglqprqva+WFqnrRAR+k+kq+E++y+ Lk+++d+l+ + ++L++e+e+L Niben101Scf17122g00007.1 23 KRFTDEQVKLLESMFKQETKLEPRKKLELARDLGLQPRQVAIWFQNRRARWKSKQMEHEYRLLKAEFDKLNMQFQSLKQEKESLL 107 8************************************************************************************ PP HD-ZIP_I/II 89 eelke 93 ++l+e Niben101Scf17122g00007.1 108 KQLEE 112 99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.82E-19	11	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.848	16	76	IPR001356	Homeobox domain
SMART	SM00389	3.9E-18	18	80	IPR001356	Homeobox domain
CDD	cd00086	3.32E-15	24	77	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.9E-20	24	83	IPR009057	Homeodomain-like
Pfam	PF00046	2.1E-17	24	74	IPR001356	Homeobox domain
PRINTS	PR00031	3.8E-6	47	56	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	51	74	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.8E-6	56	72	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.6E-12	76	117	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MEAEDTLTQG NTEPSNKKSK DGKRFTDEQV KLLESMFKQE TKLEPRKKLE LARDLGLQPR 60 QVAIWFQNRR ARWKSKQMEH EYRLLKAEFD KLNMQFQSLK QEKESLLKQL EELNDQLENN 120 HAGCIKGQDS LDSEIYTCSE NGGTDLELKD NNIPGCLNAS LVDKRVKEVE NDREGRLIEH 180 FRWKEEPEFW NIKELGDSSL GSPGHWCAVG LGRTFDLSCG NSKWWEF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	76	RRARWKSKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019234402.1	1e-156	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBL	A0A1J6KVH9	1e-155	A0A1J6KVH9_NICAT; Homeobox-leucine zipper protein athb-12
STRING	XP_009803292.1	1e-153	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2041	23	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	8e-35	homeobox 7