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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf16236g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 453aa MW: 50873.2 Da PI: 5.5882 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 299.9 | 6.3e-92 | 57 | 450 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfs 85 ++lL++cA+a++s+d +laq++L+ l+++a pdgd++qRl+ f++AL r a+ +++k l+++ +++++ ++ ++ l f+ Niben101Scf16236g00013.1 57 EQLLVHCANAIESNDPTLAQQILWVLNNIAPPDGDSNQRLTCGFLRALIVRAAK--IGTCKLLTANLNHSMEtHKFSIIELAGFV 139 79****************************************************..667777766666554424455555555** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLak 167 +++P+++f++ +aN aIleave+ + vHi+Df++++++Q p+L++a+++R egpp +++T+ g+ e ++ee+g +L + Niben101Scf16236g00013.1 140 DLTPWHRFGFTAANGAILEAVESYSIVHIVDFSLTHCMQIPTLIDAISTRLEGPPVVKLTVAGATEDLppmLDLSYEELGAKLVN 224 ****************************************************************776698888999********* PP GRAS 168 fAeelgvpfefnvl...vakrledleleeLrvkp......gEalaVnlvlqlhrll..............desvsleserdevLk 229 fA++ +v +ef+v+ ++ ++++ +++Lrv++ gEal++n++++lh+++ +++ s++s r+ +Lk Niben101Scf16236g00013.1 225 FARSRNVMMEFRVIpssSSDGFSNV-IQQLRVQNlispenGEALVINCHMMLHYIPeettvvsprfpldqSSNSSVSSFRSVFLK 308 *************977633344444.66666666666678****************************976666677799***** PP GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314 ++++l P++vv+v+++ad +s++++ r+ +a++y + +d++++ lp+ ++r+++E+ + ++i+nv+a+eg +r er e +++ Niben101Scf16236g00013.1 309 AIRNLDPTIVVLVDEDADFTSNNLVCRLRSAFNYLWIPYDTVDTFLPKGCKQRQWYEAD-ICWKIENVIAHEGVQRLERLEPKSQ 392 ***********************************************************.************************* PP GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 W +r+++a F++ +se+ + ++k +l +++ g+ ++ +++ +vl+Wk++++v+++aW Niben101Scf16236g00013.1 393 WVQRMRNANFRSSGFSEDSVLEVKNMLDEHA-AGWGLKRDEEDVVLTWKGHNVVFATAW 450 *******************************.999************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.878 | 30 | 432 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-89 | 57 | 450 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MMQFTESLPP SLHQQVSPIF SSLMLNKNDN QIQRARAWPG FLTSKNLGTI GDANCMEQLL 60 VHCANAIESN DPTLAQQILW VLNNIAPPDG DSNQRLTCGF LRALIVRAAK IGTCKLLTAN 120 LNHSMETHKF SIIELAGFVD LTPWHRFGFT AANGAILEAV ESYSIVHIVD FSLTHCMQIP 180 TLIDAISTRL EGPPVVKLTV AGATEDLPPM LDLSYEELGA KLVNFARSRN VMMEFRVIPS 240 SSSDGFSNVI QQLRVQNLIS PENGEALVIN CHMMLHYIPE ETTVVSPRFP LDQSSNSSVS 300 SFRSVFLKAI RNLDPTIVVL VDEDADFTSN NLVCRLRSAF NYLWIPYDTV DTFLPKGCKQ 360 RQWYEADICW KIENVIAHEG VQRLERLEPK SQWVQRMRNA NFRSSGFSED SVLEVKNMLD 420 EHAAGWGLKR DEEDVVLTWK GHNVVFATAW VPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 3e-44 | 51 | 452 | 82 | 474 | Protein SHORT-ROOT |
5b3h_B | 1e-44 | 51 | 452 | 28 | 420 | Protein SHORT-ROOT |
5b3h_E | 1e-44 | 51 | 452 | 28 | 420 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019258371.1 | 0.0 | PREDICTED: scarecrow-like protein 32 | ||||
Swissprot | Q9SN22 | 1e-177 | SCL32_ARATH; Scarecrow-like protein 32 | ||||
TrEMBL | A0A314LGA7 | 0.0 | A0A314LGA7_NICAT; Scarecrow-like protein 32 | ||||
STRING | XP_009607182.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8781 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-175 | GRAS family protein |