PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf15723g00008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 354aa    MW: 40017 Da    PI: 5.0456
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf15723g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK67.32.3e-21269318352
                    RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                +++l+d + + +lpi+ AAk+L++c+Tv+K+ CR+ G+ RWP+Rkiks+
  Niben101Scf15723g00008.1 269 GKLRLKDFAGHLHLPIEIAAKKLNICPTVMKKVCRRDGLLRWPYRKIKSI 318
                               68999*******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.222258338IPR003035RWP-RK domain
PfamPF020422.6E-19271318IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDNPIAIVPY RDPFDDSCSI RQISLFDENP TIGLPKSSWN QEPFTFNPTI LKSDNDFDSD  60
FGVYDPFDDP ILLDIPYECN NYLVEDSTND EAGVFGTNYC SISQDGVFEN KSHVSVWPAL  120
SSSSMCTNNC QILREITHSN GLHISKLDIY GTLGSFSKHS TSSVKQFLVR YFEACKSEGY  180
ILLQDPLCDF YEALGVGSDD GDGLDIDSLL QLSPTTSRDC QMNQQETKNE GEVNCNDMRY  240
EKIPLSAQHC SILHSDRFFS LIEQRERTGK LRLKDFAGHL HLPIEIAAKK LNICPTVMKK  300
VCRRDGLLRW PYRKIKSIRR KISKREKSLS SNDAEERASA KAEIAKGLIS GEYI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019242873.10.0PREDICTED: uncharacterized protein LOC109223069
TrEMBLA0A1J6J7N10.0A0A1J6J7N1_NICAT; Uncharacterized protein
STRINGXP_009771409.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35052027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38340.14e-06Nin-like family protein