PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf15671g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 527aa    MW: 58273.7 Da    PI: 6.9497
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf15671g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY924.7e-29245302260
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                               +DgynWrKYGqK v+g+ef+rsYY+Cts++C +k++vers+ d+++++i+Y  +H+h+k
  Niben101Scf15671g01003.1 245 EDGYNWRKYGQKLVRGNEFTRSYYKCTSPNCLAKRQVERSH-DGHITNIHYITKHDHPK 302
                               7****************************************.***************85 PP
2WRKY104.65.2e-33422480159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ++Dgy+WrKYGqK vkg+++prsYYrC+sagCp+kk+ver+++dpk+v++ Yeg+H+h+
  Niben101Scf15671g01003.1 422 VNDGYRWRKYGQKLVKGNPNPRSYYRCSSAGCPAKKHVERASHDPKLVVTAYEGQHDHD 480
                               58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-25237303IPR003657WRKY domain
PROSITE profilePS5081123.066239303IPR003657WRKY domain
SuperFamilySSF1182904.71E-23241303IPR003657WRKY domain
SMARTSM007741.9E-30244302IPR003657WRKY domain
PfamPF031061.7E-21245301IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-34411482IPR003657WRKY domain
SuperFamilySSF1182901.05E-28414482IPR003657WRKY domain
PROSITE profilePS5081135.783417482IPR003657WRKY domain
SMARTSM007742.4E-38422481IPR003657WRKY domain
PfamPF031063.7E-26423479IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MGTHKEDVTD EVSSEKLQQK QDLDTVTYRS ESKEKGICAS TSAEVISGEL QKRVSPDTLE  60
KSSQSNQDEN ALSTTCHEVL GEVKPKKSGI EAIEKFQQKP DPDTVTNRSE SKEKGTCDSV  120
SAEVVSDELL KGLSPDSLAK ASESSRVSVL PKKEPYIKSC ESDPPVKDRN VSLVPGKASD  180
SSQHIQREKM EVVVSQPNQE QVTYSTRPEK ALDKLQPRRN LDTSFQALPS DQEITPFRSA  240
EKPSEDGYNW RKYGQKLVRG NEFTRSYYKC TSPNCLAKRQ VERSHDGHIT NIHYITKHDH  300
PKPLNSPQIS PMFVVPMQMK QTDMPMGTPR EAEGKKSIVI GQTCQSIESS ESSLSTAIVL  360
ADDSATDAVL KPHKSGDEAD NSGGPDPKRQ KREVPRSDEI PPIKSHSETL HIVQTRSEVD  420
IVNDGYRWRK YGQKLVKGNP NPRSYYRCSS AGCPAKKHVE RASHDPKLVV TAYEGQHDHD  480
TPLSRTVMQN TAGADSNNTT KISGESTPES GENKLVGLDR AVHIGAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-33246482474WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250091.10.0PREDICTED: WRKY transcription factor 1-like isoform X1
TrEMBLA0A1J6I8I40.0A0A1J6I8I4_NICAT; Putative wrky transcription factor 20
STRINGXP_009605529.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45582242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.21e-71zinc-dependent activator protein-1