PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf15435g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 297aa MW: 34141.3 Da PI: 6.7888 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 128.3 | 5.9e-40 | 14 | 122 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lp+GfrFhPtdeelv++yL++k++g+++++ ++i+e+d+yk++Pw+Lp d+ky++g+r+nra+ +gyWka Niben101Scf15435g00012.1 14 LPAGFRFHPTDEELVQHYLCRKCAGQPISV-SIIAEIDLYKFDPWQLP----------------DRKYPNGSRPNRAAGTGYWKA 81 799***************************.89**************9................789****************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg dk+v + ++ g+kk Lvfy g+ap+g kt+W+mheyrl Niben101Scf15435g00012.1 82 TGADKPVGK--PNTLGIKKALVFYAGKAPRGIKTNWIMHEYRL 122 *******98..6789**************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-51 | 7 | 149 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.729 | 14 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-22 | 15 | 122 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 297 aa Download sequence Send to blast |
MIKGVHRNQQ QLELPAGFRF HPTDEELVQH YLCRKCAGQP ISVSIIAEID LYKFDPWQLP 60 DRKYPNGSRP NRAAGTGYWK ATGADKPVGK PNTLGIKKAL VFYAGKAPRG IKTNWIMHEY 120 RLANVDRSAG KSNNNLRLDD WVLCRIYNKK GTLEKYYNVD NKEHLGFEGV EEEEEKPKIL 180 PFSQGNELIA QLAPAHMPPR PQSMPTSDYF HLETSESMTR MHTTNSSSGS EHVLSSCDKE 240 VQSAPKWDDL DSALDFQLNY LDNFQYDPFD PQRQQQNCNI DQFNSFQDMF AYLQKPY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-69 | 9 | 155 | 10 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009786309.1 | 0.0 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-102 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A1U7XH85 | 0.0 | A0A1U7XH85_NICSY; NAC domain-containing protein 2-like | ||||
STRING | XP_009786309.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1239 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-102 | NAC family protein |