PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf14977g00026.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 129aa    MW: 14671.4 Da    PI: 8.4545
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf14977g00026.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.4e-105880527
                              --SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                               C++f rtG+C+yGd+Ck+ H++
  Niben101Scf14977g00026.1 58 VCNHFVRTGYCQYGDSCKYYHPK 80
                              6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004515.4E-4338IPR003604Zinc finger, U1-type
SuperFamilySSF576677.15E-16453No hitNo description
PfamPF062208.3E-10538IPR013085Zinc finger, U1-C type
SMARTSM003564.1E-55380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2065381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-85681IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-85880IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-75880IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MPLGKYYCDY CDKEFQDTAA ARKRHLQGVQ HQRAKALWYD SLRNPQLYND PDSFGKGVCN  60
HFVRTGYCQY GDSCKYYHPK QNSQNMQQTG IPPGDVFREN AGAKLGNLPP SLRPPPEGGY  120
PPLPFVDWG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760659.14e-91PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X3
SwissprotQ0JP113e-46C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A1U7VEA89e-90A0A1U7VEA8_NICSY; zinc finger CCCH domain-containing protein 3 isoform X3
STRINGXP_009615870.12e-86(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120081821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.14e-32C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]