PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf14516g00019.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 349aa    MW: 39872.9 Da    PI: 9.3003
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf14516g00019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.59.3e-52141391128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrF Ptdeel+v+yL+kkv+g+++++ ++i ++d+yk++Pw Lp+k+  +e+ewyfFs+rd+ky++g+r+nr++ +gyWka
  Niben101Scf14516g00019.1  14 LPPGFRFYPTDEELLVQYLCKKVAGHDFSM-QIIGDIDLYKFDPWVLPSKALFGEREWYFFSPRDRKYPNGSRPNRVAGTGYWKA 97 
                               79****************************.89***************8777899****************************** PP

                       NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tg+dk ++s +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
  Niben101Scf14516g00019.1  98 TGTDKVITS-QGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139
                               ********9.9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-6610162IPR003441NAC domain
PROSITE profilePS5100559.99914162IPR003441NAC domain
PfamPF023658.3E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGVQEKDPLL QLSLPPGFRF YPTDEELLVQ YLCKKVAGHD FSMQIIGDID LYKFDPWVLP  60
SKALFGEREW YFFSPRDRKY PNGSRPNRVA GTGYWKATGT DKVITSQGRK VGIKKALVFY  120
VGKAPKGTKT NWIMHEYRLF EPSRKNGSTK LDEWVLCRIY KKNSSGQKPH ISGLNSKEYS  180
HGSSTSSSSQ FDDMLDSLPE MDHKFSNLPR LNSLKNFQQG EKFNLERLDS ANFDWAILAG  240
LKPMPELRPA NQSPDVQAPQ GHVNNHINNN NYMNFLNDGY VQLTNFRGNT KVERINLDEE  300
VESGIRNQGV DKSGFFQQNI NGFSQTYTNT VDQFGIQCPN QTLNLGFRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-11011684171NO APICAL MERISTEM PROTEIN
1ut4_B1e-11011684171NO APICAL MERISTEM PROTEIN
1ut7_A1e-11011684171NO APICAL MERISTEM PROTEIN
1ut7_B1e-11011684171NO APICAL MERISTEM PROTEIN
3swm_A1e-11011687174NAC domain-containing protein 19
3swm_B1e-11011687174NAC domain-containing protein 19
3swm_C1e-11011687174NAC domain-containing protein 19
3swm_D1e-11011687174NAC domain-containing protein 19
3swp_A1e-11011687174NAC domain-containing protein 19
3swp_B1e-11011687174NAC domain-containing protein 19
3swp_C1e-11011687174NAC domain-containing protein 19
3swp_D1e-11011687174NAC domain-containing protein 19
4dul_A1e-11011684171NAC domain-containing protein 19
4dul_B1e-11011684171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269|PubMed:25005917}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269|PubMed:25005917}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783061.10.0PREDICTED: NAC domain-containing protein 72-like
RefseqXP_016445820.10.0PREDICTED: NAC domain-containing protein 72-like isoform X2
SwissprotQ9SQL00.0JA2_SOLLC; NAC domain-containing protein JA2
TrEMBLA0A1S3Y1440.0A0A1S3Y144_TOBAC; NAC domain-containing protein 72-like isoform X2
TrEMBLA0A1U7X0730.0A0A1U7X073_NICSY; NAC domain-containing protein 72-like
STRINGXP_009783061.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31222452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-127NAC family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]