PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf14338g03001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 602aa    MW: 65762.8 Da    PI: 4.5893
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf14338g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.71.1e-1072346012373
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                + LlecA+ +++++ e+a + L rl+e +s +gdp++R+ +yf+eAL +rl+ +++++ +++ + + +     e + ++k+f++
  Niben101Scf14338g03001.1 234 LKSLLECAR-LADSEPENAVKSLIRLKESVSLQGDPTERVGFYFLEALYSRLSFQTDNIPSIFGTCTPE-----ELTLSYKAFND 312
                               578******.566689999999********************************999999999766665.....78899****** PP

                      GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakf 168
                               ++P+ kf+hltaNqaIlea+e++ r+Hi+Df+i +G+QW+a+lqaLa+R++g+p s+Ri g+ s   g   + +l +tg+rL++f
  Niben101Scf14338g03001.1 313 ACPYSKFAHLTANQAILEATEKAIRIHIVDFGIVHGIQWAAFLQALATRSAGKPdSIRISGIPSVVLGssPAASLLATGNRLRDF 397
                               **************************************************77666*********8777889999*********** PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               A+ l+++fef++ + + +++l+ +++r++p+E+laVn++lql++llde+    +   + L+l ksl+P +v++ e e+++n+  F
  Niben101Scf14338g03001.1 398 ANLLDLKFEFEP-ILTPVQELNESSFRIDPDETLAVNFMLQLYNLLDETSVGVK---TALNLAKSLNPSIVTLGEYEVSLNNVGF 478
                               ************.799******************************88777666...9*************************** PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqa 337
                               l+rf++al+yys++f+sl+ +l ++s er+ vEr +lgr+i  +v + +a  rre +e +e+W+e +e aGFk+v+ls++a++qa
  Niben101Scf14338g03001.1 479 LQRFSNALNYYSTIFESLDPSLTQDSPERVQVERLILGRRIAAAVGTDEAGiRRECMEDKEHWKELMEGAGFKEVTLSHYAMSQA 563
                               *********************************************9999888********************************* PP

                      GRAS 338 klllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                               k ll +++ s  y + ++   ++ l W+d+pL++vS+W
  Niben101Scf14338g03001.1 564 KILLWNYNySSSYGLIDSPPGFLsLAWNDKPLLTVSSW 601
                               ********9999998877665555************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.126207580IPR005202Transcription factor GRAS
PfamPF035143.9E-105234601IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MAAYMCTDSG NLMAIAQQVI KQKQQQEQLQ QQEQQQHQQF LGGVNPICLS PWTGAHQSLT  60
NSPTLGYGGL TGGPGFTDPF QVVAGGTDGG EPGFQFPNLE HHSTGFRFTD FSGGPGGEFD  120
SDEWMESLIG GGDSTGSSNL QTGSYAWHMS SEFAALYGDP FSSCPNRLSI GSSPPPLTSD  180
LNGVIFSESQ KNLNPLQSWV PPSSSPPIVN KDSKVASVDM HCSSPETFSS KPLLKSLLEC  240
ARLADSEPEN AVKSLIRLKE SVSLQGDPTE RVGFYFLEAL YSRLSFQTDN IPSIFGTCTP  300
EELTLSYKAF NDACPYSKFA HLTANQAILE ATEKAIRIHI VDFGIVHGIQ WAAFLQALAT  360
RSAGKPDSIR ISGIPSVVLG SSPAASLLAT GNRLRDFANL LDLKFEFEPI LTPVQELNES  420
SFRIDPDETL AVNFMLQLYN LLDETSVGVK TALNLAKSLN PSIVTLGEYE VSLNNVGFLQ  480
RFSNALNYYS TIFESLDPSL TQDSPERVQV ERLILGRRIA AAVGTDEAGI RRECMEDKEH  540
WKELMEGAGF KEVTLSHYAM SQAKILLWNY NYSSSYGLID SPPGFLSLAW NDKPLLTVSS  600
WH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1502306021375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794663.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A1U7XUP60.0A0A1U7XUP6_NICSY; scarecrow-like protein 4
STRINGXP_009794663.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein