PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf14179g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 125aa MW: 13194.8 Da PI: 9.9713

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf14179g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.3	2.7e-31	48	99	1	52
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQ+ Niben101Scf14179g00002.1 48 KQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQR 99 79*************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.967	45	108	IPR017930	Myb domain
SuperFamily	SSF46689	3.4E-16	47	99	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-29	47	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.7E-24	48	99	IPR006447	Myb domain, plants
Pfam	PF00249	8.3E-9	50	98	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MYQPKGVPAS SLVHNNAAVH SQPLDCDDGS MDPTSGGTNN SNPSLASKQR LRWTNELHER 60 FVDAVAQLGG PDRATPKGVL RVMGVQGLTI YHVKSHLQRS GNHYGSKAAD GGAKATARAT 120 GGMLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-22	48	99	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-22	48	99	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-22	48	99	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-22	48	99	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009615786.1	1e-64	PREDICTED: myb family transcription factor PHL7-like
Swissprot	Q9SJW0	8e-34	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A1J6L7L5	6e-61	A0A1J6L7L5_NICAT; Myb family transcription factor phl7
STRING	XP_009615786.1	6e-64	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10101	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-34	G2-like family protein