PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf14022g01008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRF | ||||||||
Protein Properties | Length: 216aa MW: 24418.4 Da PI: 9.9599 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.9 | 2.3e-25 | 78 | 121 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e Niben101Scf14022g01008.1 78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 121 79***************************************986 PP | |||||||
2 | QLQ | 60.6 | 4.3e-21 | 11 | 45 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yKy+++++PvPp+Ll i+ Niben101Scf14022g01008.1 11 PFTANQWQELEHQALIYKYMVSGMPVPPDLLYTIR 45 8*****************************97776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.2E-12 | 10 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.208 | 11 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.2E-16 | 11 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.941 | 78 | 122 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.5E-21 | 79 | 121 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MMSSAARSRF PFTANQWQEL EHQALIYKYM VSGMPVPPDL LYTIRRSLDS SLSSKLILHQ 60 PHHIGWNCFQ MGFGKKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV 120 EIMTTTSTNT STTTRPISTT TNTTTPTAIS ISSINKNTKN ISSSSPNSSH HSFSYLTSTH 180 EPHQYPFLYP HSSSSRPSPA AIGLESSAYS SEICDQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767378.1 | 1e-118 | PREDICTED: growth-regulating factor 1-like | ||||
Refseq | XP_016449440.1 | 1e-118 | PREDICTED: growth-regulating factor 1-like isoform X2 | ||||
Swissprot | Q8L8A6 | 6e-61 | GRF5_ARATH; Growth-regulating factor 5 | ||||
TrEMBL | A0A1S3YB51 | 1e-117 | A0A1S3YB51_TOBAC; growth-regulating factor 1-like isoform X2 | ||||
TrEMBL | A0A1U7VLY8 | 1e-117 | A0A1U7VLY8_NICSY; growth-regulating factor 1-like | ||||
STRING | XP_009767378.1 | 1e-118 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA743 | 23 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-54 | growth-regulating factor 5 |