PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13865g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 329aa    MW: 34886.3 Da    PI: 7.0344
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13865g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_165.68.5e-21225287163
                               XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                               e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN++L+ el++l+ e ++l +++
  Niben101Scf13865g00004.1 225 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENTSLRAELSRLRSEHDQLAAQN 287
                               89*******************************************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.6E-7127IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.1E-4566192No hitNo description
Gene3DG3DSA:1.20.5.1706.6E-19218286No hitNo description
PfamPF001705.7E-19225287IPR004827Basic-leucine zipper domain
SMARTSM003381.1E-21225289IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.438227290IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.25E-11228284No hitNo description
CDDcd147028.57E-23230281No hitNo description
PROSITE patternPS000360232247IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MPPYGTPPHP YVAMYPHGGI YAHPSIPPGS YPFSPFAMPS PNGVAEAAVN TSGNAEVDGK  60
SSEGKEKLPI KRSKGSLGSL NMITGKNNEP GKTSGASANG AYSKSAESGS DGSSEGSDAN  120
SQNYDVSATA EASQNDNSAH SSQNGGTSAP HSLMNQTMPI MPMSAAGGIP GPTTNLNIGM  180
DYWSAATSPS MPTIHGKVPS ASVAGGMVTA GSRDIVQSQM WIQDERELKR QRRKQSNRES  240
ARRSRLRKQA ECDELAQRAE ALKEENTSLR AELSRLRSEH DQLAAQNASL KERLGEVPGQ  300
EDPRPSRYDI HLGKDTQHSS QTEPTQAGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241247RRSRLRK
2241248RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250793.10.0PREDICTED: bZIP transcription factor 16-like
RefseqXP_019250867.10.0PREDICTED: bZIP transcription factor 16-like
SwissprotQ501B21e-138BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A1J6J3870.0A0A1J6J387_NICAT; Bzip transcription factor 16
STRINGSolyc08g076100.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30652446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-131basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]