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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf13505g02008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 190aa MW: 21310.1 Da PI: 4.4049 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.6 | 7.5e-14 | 10 | 46 | 14 | 50 |
HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kR++ +lKK ELS+LCd++++ ii+ +g++ +++ Niben101Scf13505g02008.1 10 LKRKACVLKKTMELSILCDVKACAIIVDADGTVETWP 46 69**********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00319 | 2.7E-9 | 10 | 45 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.58E-14 | 10 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.853 | 11 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MEAADKRAML KRKACVLKKT MELSILCDVK ACAIIVDADG TVETWPENPA DLNPILDQYR 60 QYSLKKQKNV VVDVENRKGK EDVLLALDSK IEAVKRRIEF LNGKSIITAM NCDGNGEFAE 120 ILSDIIGGGS NSVNYGQEFE IQPCAYWDGE IGFSTANYVQ QLEQPCSNGN KNNPAYVDFE 180 FDFDFLLQHE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019238550.1 | 1e-100 | PREDICTED: uncharacterized protein LOC109218635 | ||||
TrEMBL | A0A1J6K9J0 | 2e-98 | A0A1J6K9J0_NICAT; Uncharacterized protein | ||||
STRING | Solyc05g013370.1.1 | 3e-18 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3723 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 9e-11 | AGAMOUS-like 103 |