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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf13411g01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 892aa MW: 98856 Da PI: 6.4182 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.6 | 1.4e-24 | 130 | 231 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+lt sd++++g +++p++ ae+ +++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD Niben101Scf13411g01001.1 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQQPPCQ-ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDA 213 99*****************************97677775.9******************************************** PP EEEEE-SSSEE..EEEEE-S CS B3 80 vvFkldgrsefelvvkvfrk 99 v+F ++++ +l+++++r+ Niben101Scf13411g01001.1 214 VIFI--WNENNQLLLGIRRA 231 ****..7888889****997 PP | |||||||
2 | Auxin_resp | 120.9 | 9.7e-40 | 256 | 339 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k Niben101Scf13411g01001.1 256 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 339 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.44E-49 | 115 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.1E-44 | 123 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.19E-23 | 129 | 230 | No hit | No description |
Pfam | PF02362 | 1.1E-22 | 130 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.042 | 130 | 232 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.3E-25 | 130 | 232 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-34 | 256 | 339 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 8.8E-7 | 751 | 840 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.96E-7 | 752 | 832 | No hit | No description |
PROSITE profile | PS51745 | 23.8 | 758 | 842 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 892 aa Download sequence Send to blast |
MRVSSAGFNP QPEEAAGEKK CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN 60 KEVDAHIPNY PGLPPQLICQ LHNLTMHADV ETDEVYAQMT LQPLSAQEQK DVCLLPAELG 120 IPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD YSQQPPCQEL IAKDLHGNEW 180 KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDAVIFIWNE NNQLLLGIRR ANRPQTVMPS 240 SVLSSDSMHI GLLAAAAHAA ATNSRFTIFY NPRASPSEFV IPLAKYAKAV YHTRISVGMR 300 FRMLFETEES SVRRYMGTIT GISDLDPVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE 360 PLTTFPMYPS PFSLRLKRPW PSLPVHSGFP NGDMTMNSPL SWLRGDIGDQ GIQSLNFQGY 420 GVTPFMQPRI DASMLGLQPD ILQTMAALDP SKFANQSFMQ FQQSIPGVSA SLSHSQILQP 480 SHSQQNLLHG FSENQLISQA QMLQQQLQRR QNYNDQQQLL QPQLQQHQEV NSSQFQHQQQ 540 TKAMSSLSQM TSAAQPQLSH LQVLSSTGSP QTFSDILGNH VNASSNSTMQ SLLSSFSRDG 600 ASAVLNMHEA HPLVSSSSSS KRIALESQLP SRVTPFAVPQ PEDVISHNTK VSDLSSLLPP 660 LPGRESFSDY RGVEDSQNNA MYGFNTDCLN ILQNGMSNMK DSTGDNGSLS IPYATSTFTN 720 TVGNEYPINS DMTTSSCVDE SGFLQSSENG DQRNPTNRTF VKVHKSGSFG RSLDISKFSS 780 YHELRSELAH MFGLEGLLED PERSGWQLVF VDRENDVLLL GDDPWQEFVN NVWYIKILSP 840 LEVQQMGKDG LDLPNAGLAQ RLPSNGVGCD DYMNQKGSRN TMNGIPLGSL DY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-162 | 13 | 360 | 42 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019249244.1 | 0.0 | PREDICTED: auxin response factor 6-like isoform X1 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | D7P231 | 0.0 | D7P231_NICBE; Auxin response factor | ||||
STRING | XP_009757615.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2368 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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