PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf13387g00028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YA | ||||||||
Protein Properties | Length: 251aa MW: 28154.4 Da PI: 9.4542 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.6 | 1.8e-32 | 116 | 172 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RRq Rakle+++kl k+rkpylheSRh hA++R RgsgGrF Niben101Scf13387g00028.1 116 DGPIYVNAKQYHGIMRRRQIRAKLEAQNKL-VKNRKPYLHESRHLHAVNRVRGSGGRF 172 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 9.9E-36 | 114 | 175 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.974 | 115 | 175 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 7.7E-28 | 118 | 172 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.5E-23 | 118 | 140 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 120 | 140 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.5E-23 | 149 | 172 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MKSLDPDLQG ETLRLTHSII NSQDEMTTSE KTNSQDQCAS SEYVHDERYG RDMQAQIKPA 60 RFSLQNEVAH STGFSPFGYS DPYMSGLYTA YGPQAFPQMM GIAPTRVPLP LDLAEDGPIY 120 VNAKQYHGIM RRRQIRAKLE AQNKLVKNRK PYLHESRHLH AVNRVRGSGG RFLSSKKVHQ 180 SDPNCYPTNS ISSQDSVEHE NSTSAFSSVR KDVNNGVSFQ QQPDHRAFGV SSHMAITMQG 240 NGTQQRAPVV R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-21 | 116 | 185 | 2 | 74 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009761217.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-7-like | ||||
Refseq | XP_009761218.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-7-like | ||||
TrEMBL | A0A1U7V496 | 0.0 | A0A1U7V496_NICSY; nuclear transcription factor Y subunit A-7-like | ||||
STRING | XP_009761217.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5009 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 2e-42 | nuclear factor Y, subunit A3 |