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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf13186g03007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 151aa MW: 17171.9 Da PI: 6.5123 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5.2e-18 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ ar g++Rt+k+c++rw++yl Niben101Scf13186g03007.1 16 KGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 63 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 8 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.921 | 11 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.89E-22 | 17 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.90E-11 | 18 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-8 | 67 | 90 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MDNKRTCNSQ DVEVRKGPWT MEEDLILINY IANHGEGVWN SLARSAGLKR TGKSCRLRWL 60 NYLRPDVRRG NITPEEQLLI MELHAKWGNR PSSNSENNHH QQASTSQAST GNNSIETYSP 120 SFYNGNNVGT TNFQANFPAE TNDNIWSMED L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-13 | 13 | 90 | 24 | 100 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016500297.1 | 1e-96 | PREDICTED: myb-related protein 305-like | ||||
Swissprot | P81391 | 1e-65 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A1S4CGI8 | 2e-95 | A0A1S4CGI8_TOBAC; myb-related protein 305-like | ||||
STRING | XP_009613846.1 | 1e-94 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 3e-55 | myb domain protein 21 |
Publications ? help Back to Top | |||
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