![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf12928g01020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 163aa MW: 18777 Da PI: 10.4491 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.2 | 2.3e-16 | 79 | 148 | 18 | 95 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 lp +f++++ ++++ t+tl de+g +W + +k++ l++GWk+F+ +++L +gD +vF+l++ ++f +v+ Niben101Scf12928g01020.1 79 LPSNFCRKNL--PRRDDTITLIDETGGEWPTVYLAQKNG----LSGGWKKFAVDHDLADGDAIVFHLIRPTKF--KVT 148 9*****9995..356679***************555555....9***********************998888..444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.9E-17 | 42 | 151 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.6E-16 | 68 | 153 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.89E-19 | 78 | 152 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-13 | 79 | 148 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.492 | 79 | 153 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.92E-18 | 79 | 151 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 163 aa Download sequence Send to blast |
MVMLKVKYEE LRQQRLEENK KRMEELNLPL LTQALKLSSS PKPSPMKKVK PRIIRTELVS 60 VRRSPRVANK PVPEYKEGLP SNFCRKNLPR RDDTITLIDE TGGEWPTVYL AQKNGLSGGW 120 KKFAVDHDLA DGDAIVFHLI RPTKFKVTLL NIKDVCKFVS EHL |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027149636.1 | 3e-62 | B3 domain-containing protein Os06g0194400 isoform X3 | ||||
Swissprot | Q9FMZ4 | 1e-35 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A4D9AMS2 | 7e-63 | A0A4D9AMS2_SALSN; Uncharacterized protein | ||||
STRING | XP_009620219.1 | 5e-60 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1628 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42700.1 | 1e-32 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|