PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12670g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 406aa    MW: 44199 Da    PI: 6.7384
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12670g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.81.5e-10232280553
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                               kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+
  Niben101Scf12670g00009.1 232 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTETTTLSAQLTLLQ 280
                               9*****************************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-11228302IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.933230280IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.6E-10232283No hitNo description
SuperFamilySSF579598.44E-11232282No hitNo description
PfamPF001709.8E-9232283IPR004827Basic-leucine zipper domain
CDDcd147032.06E-18233280No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDKDKSSSHT VGSLPPFGRY SLFSPPGGSS NAKLEQSGLA NLPPLGPGNA SESGHFCHGL  60
SADSSRFSHD ISRMPDNPPK KFGHRRAHSE ILTLPDDISF DSDLGVVGGL DGPSLSDETE  120
EDFLSMYLDM DKFNSSSVSS DFQVDESSSS AAAASGSLQI PAMASAAAGS DNVGPTASVK  180
PRVRHQHSQS MDGSTAIKPE MLMSGVDEAS PLETKKATSA AKLAELALVD PKRAKRIWAN  240
RQSAARSKER KMRYIAELER KVQTLQTETT TLSAQLTLLQ VHITLNDALK EEIQHLKVLT  300
GQGIANGGPM MNFPTSFGRN QQFYSNNHAM HTLLAAQQLQ QLQIHSHKQQ HQFQQHQLHQ  360
FQQQQQLQHQ QQLQEQLHQA GDMNSRSSLS SPQNDNASDT SAISKD
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016434211.10.0PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-120POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A1S3X3100.0A0A1S3X310_TOBAC; probable transcription factor PosF21
STRINGXP_009799286.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39652137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.12e-95bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]