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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Niben101Scf12394g02003.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
NAC |
| Protein Properties |
Length: 169aa MW: 19288.9 Da PI: 5.3128 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf12394g02003.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 55.9 | 1.5e-17 | 5 | 51 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
lppGfrFhPtdeel+++yL++k+++ ++++ ++i++vd++k+ePwdLp
Niben101Scf12394g02003.1 5 LPPGFRFHPTDEELITFYLTNKISDFNFTA-KAIADVDLNKCEPWDLP 51
79*************************999.88**************9 PP
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| 2 | NAM | 50.7 | 6e-16 | 53 | 93 | 80 | 121 |
NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdW 121
+gyWk+tg+dke+++ +g lvg+kktLvfy+grapkgekt+W
Niben101Scf12394g02003.1 53 AGYWKTTGNDKEIFR-GGVLVGMKKTLVFYRGRAPKGEKTNW 93
7**************.************************** PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 169 aa
Download sequence Send
to blast |
MEENLPPGFR FHPTDEELIT FYLTNKISDF NFTAKAIADV DLNKCEPWDL PEAGYWKTTG 60
NDKEIFRGGV LVGMKKTLVF YRGRAPKGEK TNWEEWVVCR VFHKSSTVKK PQPTSSSPQS 120
EESPNCDMTY TFANELGDIE LPSNFYGLAT PSMAIFAIIF LYRITPLRT
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-29 | 4 | 110 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-29 | 4 | 110 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-29 | 4 | 110 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-29 | 4 | 110 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-29 | 4 | 110 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-29 | 4 | 110 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-29 | 4 | 110 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-29 | 4 | 110 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-29 | 4 | 110 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-29 | 4 | 110 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-29 | 4 | 110 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-29 | 4 | 110 | 19 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 1e-29 | 4 | 110 | 16 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-29 | 4 | 110 | 16 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Vidal EA,Álvarez JM,Gutiérrez RA
Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
Plant Signal Behav, 2014. 9(3): p. e28501
[PMID:24642706] - Lee MH,Jeon HS,Kim HG,Park OK
An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
New Phytol., 2017. 214(1): p. 343-360
[PMID:28032643]
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