PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf12320g01017.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 514aa MW: 58218.2 Da PI: 8.2855

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf12320g01017.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.6e-18	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+e+Le+l+e+++yp+ e++++LA++ gLte+q++ WF+ rR k+k+ Niben101Scf12320g01017.1 20 KKRIIKTRAQVEALEKLYEEHKYPTDEMKADLAESSGLTEKQISGWFCHRRLKDKR 75 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-20	6	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.33E-16	12	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.536	16	76	IPR001356	Homeobox domain
SMART	SM00389	1.5E-18	18	80	IPR001356	Homeobox domain
CDD	cd00086	1.11E-15	20	75	No hit	No description
Pfam	PF00046	1.5E-15	20	75	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MEDLCEVHSE DDKGHPEKNK KRIIKTRAQV EALEKLYEEH KYPTDEMKAD LAESSGLTEK 60 QISGWFCHRR LKDKRLSNGE IYANGRQDRS SGVIQDHGSG FRQDSCGSTK QADDKRFDHR 120 EVESRRLTGP EFSTADVTYE VGTHFRGKSN RMDDASSRSS SSLRNECFSH NAESYDIATS 180 RYISQNLPTD FKGVKPKNGP SGYLKVKGQV ENAAITAVKR QLGRHYRLDG PALGVEFDPL 240 PPGAFESSVP NPVNDPYYST EPVPDCSPDM SNVYRRSNGH GSNSKSNSHD SDPDGLRFKR 300 KANSALPENR FNLKPKPNSS ELNEYPKRNS SLDTCEGSAR KIAVDSRDSC KFMPKHGRAE 360 IRASTGSSNG LRSPYVGKVN GEQLKPRFNS HSEVRLKAVE KEHFDRKPSD YKGINYHNFE 420 GRELPKIVEK DHSSGKRTAV DENHDLVRVK VPRHNETRVV HRPMDEVPDH QEYLRRAPAL 480 EIPLQTNHRI RTAAEMRRSF SEDQETEESS SFDD

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MEDLCEVHSE DDKGHPEKNK KRIIKTRAQV EALEKLYEEH KYPTDEMKAD LAESSGLTEK  60
QISGWFCHRR LKDKRLSNGE IYANGRQDRS SGVIQDHGSG FRQDSCGSTK QADDKRFDHR  120
EVESRRLTGP EFSTADVTYE VGTHFRGKSN RMDDASSRSS SSLRNECFSH NAESYDIATS  180
RYISQNLPTD FKGVKPKNGP SGYLKVKGQV ENAAITAVKR QLGRHYRLDG PALGVEFDPL  240
PPGAFESSVP NPVNDPYYST EPVPDCSPDM SNVYRRSNGH GSNSKSNSHD SDPDGLRFKR  300
KANSALPENR FNLKPKPNSS ELNEYPKRNS SLDTCEGSAR KIAVDSRDSC KFMPKHGRAE  360
IRASTGSSNG LRSPYVGKVN GEQLKPRFNS HSEVRLKAVE KEHFDRKPSD YKGINYHNFE  420
GRELPKIVEK DHSSGKRTAV DENHDLVRVK VPRHNETRVV HRPMDEVPDH QEYLRRAPAL  480
EIPLQTNHRI RTAAEMRRSF SEDQETEESS SFDD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019254506.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like isoform X1
TrEMBL	A0A1J6HZX0	0.0	A0A1J6HZX0_NICAT; Homeobox-ddt domain protein rlt1
STRING	XP_009630181.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	8e-69	HB-other family protein