 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Niben101Scf12214g00007.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
Family |
MYB_related |
Protein Properties |
Length: 158aa MW: 18769 Da PI: 6.7924 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Niben101Scf12214g00007.1 | genome | BTI | - |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 48.2 | 2.4e-15 | 2 | 42 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
T++E+ l ++++ ++G++ W++Iar+++ gRt++ +k++w+++
Niben101Scf12214g00007.1 2 TPQEERLVLELHSKWGNR-WSRIARKIP-GRTDNKIKNYWRTH 42
9*****************.*********.************97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 158 aa
Download sequence Send
to blast |
MTPQEERLVL ELHSKWGNRW SRIARKIPGR TDNKIKNYWR THTRKKTQEQ RKKYTCISPS 60 SSFSNSSSSS SITHEENERN FYDTGGIELL QIEGQKKVND QEQAGESMKV YSMDEIWKDI 120 ELLEENETIN KPIMGSISPL WDYCPDPMWK DFDWNTFR
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Nishida S,Kakei Y,Shimada Y,Fujiwara T
Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana. Plant J., 2017. 91(4): p. 741-753 [PMID:28586097] - Imran QM, et al.
Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes. Sci Rep, 2018. 8(1): p. 771 [PMID:29335449]
|