PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf11999g00010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 199aa MW: 21719.6 Da PI: 5.8005

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf11999g00010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.9	4.2e-30	2	104	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+vlrr+C+++C+l+ ++ p +q +++ +v k+FG+s ++ +++a+pe++r+++++sl++eA+ r+ +Pv Gavg++ Niben101Scf11999g00010.1 2 SCNGCRVLRRRCSDNCTLRACLdgiddPRAQGNATLFVSKFFGRSDLMAFISAVPENRRPALFKSLLFEACGRTVNPVTGAVGLL 86 6***********************99***************************************************** PP DUF260 81 lklqqqleqlkaelallk 98 ++++++++q+++e++l++ Niben101Scf11999g00010.1 87 SRGNWHVCQKAVETVLVG 104 **********998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.315	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.1E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MSCNGCRVLR RRCSDNCTLR ACLDGIDDPR AQGNATLFVS KFFGRSDLMA FISAVPENRR 60 PALFKSLLFE ACGRTVNPVT GAVGLLSRGN WHVCQKAVET VLVGGNLQPV FAGILTPTPY 120 MDETFESFRC GGAWDIPNQF SNKSGSFIDG SDHTDTTEWV GLEKRWNTTS SIGSETELSD 180 VSLGLDSGNK EPKLLNLFV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019224836.1	1e-141	PREDICTED: LOB domain-containing protein 38-like isoform X1
Swissprot	Q9SN23	7e-54	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A314KWD1	1e-140	A0A314KWD1_NICAT; Lob domain-containing protein 38
STRING	XP_009783238.1	1e-140	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	3e-56	LOB domain-containing protein 38