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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf11805g02005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 383aa MW: 44215.9 Da PI: 6.0274 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.7 | 3.6e-07 | 132 | 156 | 6 | 30 |
HHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 6 nerErrRRdriNsafeeLrellPka 30 e+Er+RR+++ + ++ Lr+llP Niben101Scf11805g02005.1 132 REIERQRRQEMSNLYASLRQLLPLE 156 69*********************85 PP | |||||||
2 | HLH | 34.2 | 4.6e-11 | 238 | 285 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 e+Er+RR+++ + ++ Lr+llP ++K s ++ +Av+YI +Lq Niben101Scf11805g02005.1 238 REIERQRRQEMSNLYASLRQLLPLeY---LKGKRSTSDHILEAVNYIVQLQ 285 69**********************77...9*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 27 | No hit | No description |
SuperFamily | SSF47459 | 1.1E-5 | 125 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-4 | 126 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 8.905 | 126 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 11 | 132 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-4 | 132 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-13 | 231 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.805 | 232 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.2E-9 | 237 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-4 | 238 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-8 | 238 | 285 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MVMEIEKDQE LLSEDITALQ SLAISSCLSC NQLYVWFEVF FILSNDDDND NHQLLYPPTI 60 TNSSSFLYYQ EDDLVTDLTP FHSLEGDRKN VDFDSTNKIN KRGKKSQNSS SAVSLQFDEN 120 TTDCKQKKII RREIERQRRQ EMSNLYASLR QLLPLEYLKL LYPPTITNSS SFLYYQEDDL 180 VTDLTPFHSL EGDRKNVDFD STNKINKRGK KSQNSSSAVS LQFDENTTDC KQKKIIRREI 240 ERQRRQEMSN LYASLRQLLP LEYLKGKRST SDHILEAVNY IVQLQKKVRK IEENRDKLKM 300 ALSSSDVDYP KSGCSSSSHE SSEAIITVLI CLDGMEILTD CSVTNERFCL SRVLEVLLRE 360 GLSIQSCSCN KVNGRLRHTI RTE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009624566.1 | 1e-126 | PREDICTED: transcription factor bHLH118-like | ||||
TrEMBL | A0A1S3XVI9 | 1e-124 | A0A1S3XVI9_TOBAC; transcription factor bHLH118-like | ||||
STRING | XP_009624566.1 | 1e-125 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA598 | 24 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62975.1 | 2e-21 | bHLH family protein |