PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 82aa MW: 9713.12 Da PI: 7.5148

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf11751g01010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.7	2.3e-17	8	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W +eEde+lv v+ lG +W+ Ia+ g+ R++k+c++rw++yl Niben101Scf11751g01010.1 8 RGQWLEEEDERLVMIVAILGECRWDDIAKASGLQRSGKSCRLRWLNYL 55 899********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.977	1	59	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-20	2	58	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-11	7	57	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-15	8	55	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.06E-19	9	82	IPR009057	Homeodomain-like
CDD	cd00167	3.40E-9	11	55	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.8E-7	59	82	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MQQDELRRGQ WLEEEDERLV MIVAILGECR WDDIAKASGL QRSGKSCRLR WLNYLRPNLK 60 HGHITADEEH LIIQLQKQFG NK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	7e-14	5	82	24	100	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269\|PubMed:9839469}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009804412.1	3e-50	PREDICTED: transcription factor MYB48
Swissprot	Q9SCP1	7e-30	MYB27_ARATH; Transcription factor MYB27
TrEMBL	A0A1U7YK03	7e-49	A0A1U7YK03_NICSY; transcription factor MYB48
STRING	XP_009804412.1	1e-49	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	3e-32	myb domain protein 27

Publications ? help Back to Top
Albert NW, et al. A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots. Plant Cell, 2014. 26(3): p. 962-80 [PMID:24642943]