PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Niben101Scf11552g02001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 304aa MW: 34464 Da PI: 9.0799

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf11552g02001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.1	2.2e-33	62	202	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...v.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lp+G++F+P+d+e++ e+L++kv +++ + + i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk Niben101Scf11552g02001.1 62 LPAGVKFDPSDHEIL-EHLEAKVISDTlklhplI---DefiLtIDGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRK 141 799*********9.99*99995554443...143333666657******.566677888************ PP NAM 75 nratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +r+++ + +W++tgk+++v+ +g l+g kk Lv+y gr++k+ekt+Wvmh+y+l Niben101Scf11552g02001.1 142 RRKVRteidggETRWHKTGKTRPVYI-GGVLKGYKKNLVLYtnYGRQRKPEKTNWVMHQYHL 202 755456655778**********.**********66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-37	56	221	IPR003441	NAC domain
PROSITE profile	PS51005	32.848	62	221	IPR003441	NAC domain
Pfam	PF02365	1.9E-14	63	202	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MTWCSQSNGE TALPIISAPP SDENNIMITS KVDHEIRIIT CPSCGHSIEL QNQRGIHDLP 60 GLPAGVKFDP SDHEILEHLE AKVISDTLKL HPLIDEFILT IDGENGICYT HPEKLPGVSK 120 DGQVRHFFHR PSKAYTTGTR KRRKVRTEID GGETRWHKTG KTRPVYIGGV LKGYKKNLVL 180 YTNYGRQRKP EKTNWVMHQY HLGENEEEKD GELAVSKVFY QTQPRQCGSL SIRKPVDNKK 240 SRSLSRQDSP ILKTMNFVDY YNPPFISHDI GSQNRDSSPQ LIQNLVVHGD SSSFVIPSNA 300 RKEK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019230486.1	0.0	PREDICTED: NAC domain-containing protein 73-like isoform X2
Swissprot	O49459	1e-117	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A1U7Y2Q7	0.0	A0A1U7Y2Q7_NICSY; NAC domain-containing protein 8-like
STRING	XP_009797428.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2875	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-110	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]