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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Niben101Scf11552g00015.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | ARF | ||||||||
| Protein Properties | Length: 737aa MW: 80364.7 Da PI: 7.9602 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 76.4 | 3.3e-24 | 157 | 258 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78
f+k+lt sd++++g +++p++ ae++ + ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD
Niben101Scf11552g00015.1 157 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyrQ--QRPSQELVAKDLHGIEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGD 239
99****************************9743..345679******************************************* PP
EEEEEE-SSSEE..EEEEE-S CS
B3 79 fvvFkldgrsefelvvkvfrk 99
v+F ++ ++el+++v+r+
Niben101Scf11552g00015.1 240 AVLFL--RTADGELRLGVRRA 258
*****..4589999****997 PP
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| 2 | Auxin_resp | 111.6 | 7.7e-37 | 283 | 364 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82
+++a+s++++F+++YnPr s+s Fv +++k++k+l +++s+GmRfkm++eted++e+r++G+vvgvsd+dpvrWp+SkW++L
Niben101Scf11552g00015.1 283 VVNAISSTNAFSICYNPRGSSSGFVLPYHKFSKTLAHPFSAGMRFKMRVETEDAAEKRFTGLVVGVSDVDPVRWPGSKWKCL 364
6899*****************************************************************************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.40.330.10 | 4.3E-40 | 151 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 4.71E-42 | 151 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.01E-21 | 155 | 257 | No hit | No description |
| PROSITE profile | PS50863 | 13.394 | 157 | 259 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 1.6E-22 | 157 | 259 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 5.5E-22 | 157 | 258 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 3.1E-31 | 284 | 364 | IPR010525 | Auxin response factor |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009725 | Biological Process | response to hormone | ||||
| GO:0010050 | Biological Process | vegetative phase change | ||||
| GO:0010158 | Biological Process | abaxial cell fate specification | ||||
| GO:0010582 | Biological Process | floral meristem determinacy | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 737 aa Download sequence Send to blast |
MMMCGLIDLN TVDNDDVGQE TTAPVSPASS STTSGCSDLT SSSLPAVASV CMELWHACAG 60 PMISLPKKGS AVVYLPQGHL EHLSEYPPIA YNLPPHVFCR VVDVKLQADA ASDEVYAQVS 120 LVPDNQIEQK WRDGDIYADT EEEEIEGAGK STTPHMFCKT LTASDTSTHG GFSVPRRAAE 180 DCFPPLDYRQ QRPSQELVAK DLHGIEWKFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA 240 VLFLRTADGE LRLGVRRASQ AKTCSNYLAA YSQLLNVSGI VDVVNAISST NAFSICYNPR 300 GSSSGFVLPY HKFSKTLAHP FSAGMRFKMR VETEDAAEKR FTGLVVGVSD VDPVRWPGSK 360 WKCLLIRWDD LDVSRHNRVS PWEIEPSGSA PLSSSLVMPS AKRTRIGFPI TKADFPIPRD 420 GIAVSDFGES SRFQKVLQGQ EILGINSPYG GFDAHSPRTG GTRCFPIFPS SGTSRMGSSI 480 RTLLGDSDKS PKSIGFSDSS RFNKVLQGQE TFSTPPYGRG HAGSLMQEKS RTGIIIGIQV 540 PSHVNRWSAP NQSHCNPSTL VPAPSPPSVL SFQHPRSPAS KFQAMFNHQH GKLETATQAL 600 DMSESCSRHL ASGSHAEDIS RKGDTQGISS FSFLKEQKQT GISYLSLGTQ SSQNLVSMCK 660 TSCRIFGFPL TENKLNATRA ENPAEAVYSR DLETTFLPSS DGKLQPGQPL MSNVVGTNFT 720 KVNDLYAARD VLLDIAL |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldy_A | 1e-107 | 49 | 389 | 18 | 357 | Auxin response factor 1 |
| 4ldy_B | 1e-107 | 49 | 389 | 18 | 357 | Auxin response factor 1 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00021 | PBM | Transfer from AT2G33860 | Download |
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| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019226082.1 | 0.0 | PREDICTED: auxin response factor 3-like isoform X2 | ||||
| Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
| TrEMBL | A0A1J6IMS3 | 0.0 | A0A1J6IMS3_NICAT; Auxin response factor | ||||
| STRING | XP_009589968.1 | 0.0 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA6101 | 23 | 33 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G33860.1 | 0.0 | ARF family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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