 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Niben101Scf11508g01003.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
Family |
NAC |
Protein Properties |
Length: 410aa MW: 46567.9 Da PI: 7.6508 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Niben101Scf11508g01003.1 | genome | BTI | - |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 160.4 | 6.9e-50 | 39 | 164 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
+pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkat
Niben101Scf11508g01003.1 39 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKAT 122
79***************************.89***************8778899******************************* PP
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
g d+ + s++ + +glkktLvfy+g+ap+g +t+W+m+eyrl
Niben101Scf11508g01003.1 123 GADRMIRSENWRSIGLKKTLVFYSGKAPNGIRTSWIMNEYRL 164
****************************************98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 410 aa
Download sequence Send
to blast |
MAIVPFTSII MSQSQQDDTI NNITNTIKDD DDHAHDMVMP GFRFHPTEEE LVEFYLRRKV 60 EGKRFNVELI TFLDLYRYDP WELPALAAIG EKEWYFYVPR DRKYRNGDRP NRVTTSGYWK 120 ATGADRMIRS ENWRSIGLKK TLVFYSGKAP NGIRTSWIMN EYRLPQHETE RLQKAEISLC 180 RVHKRSGVED HPCLPRSLPT TRASSSSSSR GTSNSIKKQH HQQVVQNSLI SPYVVGQSSH 240 QQQIDEKLSI ETSASSTSTD HHHHHHHVAT SLGLNSLSNS YDSIALDHMA RGTVTSALLT 300 TSNSLSPFAS LVSPSSTGAV VHDLHTLINL DQQVVFHNQN FHNNPINHIP AVASQQFLQP 360 QVLPQHAQPQ SLLFQGSLQS SSSFSDRLWE WSSIQTDANC KDYQPNNPFK
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-54 | 27 | 185 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-54 | 27 | 185 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-54 | 27 | 185 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-54 | 27 | 185 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-54 | 27 | 185 | 6 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-54 | 27 | 185 | 6 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |