PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11389g01030.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 106aa    MW: 12384.1 Da    PI: 8.6037
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11389g01030.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019931123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C+ C+k+++   +L+ H+r+H
  Niben101Scf11389g01030.1  9 FVCKLCNKRYPCGKSLEDHMRSH 31
                              89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-4632IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.89E-6736No hitNo description
PROSITE profilePS5015710.45936IPR007087Zinc finger, C2H2
PfamPF139125.9E-6932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MEEDQDMKFV CKLCNKRYPC GKSLEDHMRS HEFEENVEAK LKKVQSWCST INGKNFKREN  60
QSKLELGGVS NYGLRENPKK TWRAEDSNSL CLKEKFVSNV GKCFNQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245577.13e-52PREDICTED: uncharacterized protein LOC109225388
TrEMBLA0A1J6IT727e-51A0A1J6IT72_NICAT; Zinc finger protein zat1
STRINGXP_009761680.16e-51(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-14C2H2-like zinc finger protein