PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf11383g00017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GeBP | ||||||||
Protein Properties | Length: 259aa MW: 28029 Da PI: 9.7884 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 56.4 | 8.2e-18 | 1 | 57 | 41 | 97 |
DUF573 41 vkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +k++ +++++k+qlveK+rrLKkK+++ ++k+ sgke++f+++hd+ +fe+s+kiW Niben101Scf11383g00017.1 1 IKSKFQLDFNKNQLVEKLRRLKKKYRTVMSKMGSGKEFVFKSAHDHATFEISRKIWT 57 68999***************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 7.1E-17 | 1 | 56 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
IKSKFQLDFN KNQLVEKLRR LKKKYRTVMS KMGSGKEFVF KSAHDHATFE ISRKIWTNVG 60 SAVRGGSNGV AGSVVLYAPP EDGGLDDDDA HVNPNPYAND LIDHSPKFNL NSNPNGIDIK 120 TPRPRKRSPA ASTEAVKPSG GSATVPLAAA PVAEVAATVA ASMPSLIEET VRNCVSPIFK 180 ELLNSVANLN GPSRGFGFGG MGMNPIPLGF GGGAMSLEMM GDEKWRKQQM LELEVYSKRL 240 ELVQDQIKAQ LEELRSMGS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016507116.1 | 1e-172 | PREDICTED: uncharacterized protein LOC107824825 | ||||
TrEMBL | A0A1S4D151 | 1e-171 | A0A1S4D151_TOBAC; uncharacterized protein LOC107824825 | ||||
STRING | XP_009591277.1 | 1e-171 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4052 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 6e-49 | DNA-binding storekeeper protein-related transcriptional regulator |