PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11138g01008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 397aa    MW: 44129.4 Da    PI: 9.286
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11138g01008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.92.5e-1383139155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  Niben101Scf11138g01008.1  83 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 139
                               57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-983139IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1583148IPR016177DNA-binding domain
SMARTSM003805.3E-1984153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-1284148IPR001471AP2/ERF domain
PROSITE profilePS5103218.51884147IPR001471AP2/ERF domain
PRINTSPR003673.8E-58596IPR001471AP2/ERF domain
PRINTSPR003673.8E-5129149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MVKTKNQRTA LLMASPSSEP TAKPEGSSGN DVGGGETSEA MGSIGTDQLL LYRGLKKAKK  60
ERGCTAKERI SKMPPCTAGK RSSIYRGVTR HRWTGRYEAH LWDKSTWNQN QNKKGKQGAY  120
DDEEAAARAY DLAALKYWGP GTLINFPVTD YTRDLEEMQN VSREDYLASL RRKSGGFSRG  180
ISKYRPLSRK IDLSSYIKWW GGNKARQTDS HLKTSEETKV GCPEDIDNEL RASELSIQQT  240
EPYEMPCLGV CQERKNHKSS ALSAMSILSQ SAAYKSLQEK VAKKKEKVEN DENENKSTIN  300
RVDHGKTIEK SSPDSGSERL GAAFLNPGGS SISRNLHPLT PLLSAPLLTN YNNNVDPLTD  360
PVLWTSLVPI FHTGSSRTVE VHKSEATSDY TLFQQED
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783849.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-128AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A1U7XA860.0A0A1U7XA86_NICSY; AP2-like ethylene-responsive transcription factor At2g41710
STRINGXP_009783849.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107341921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-106AP2 family protein