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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf10974g01004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 27969.4 Da PI: 7.6129 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.4 | 1.7e-10 | 77 | 128 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h e+Er+RR+++ ++ Lr+ lP ++K s ++ +A +YI +Lq Niben101Scf10974g01004.1 77 KIVHREIERQRRQEMAILYASLRQQLPLE--IIKGKRSTSDHILEAANYIEHLQ 128 678*************************7..4*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.93E-12 | 72 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.96E-8 | 73 | 132 | No hit | No description |
PROSITE profile | PS50888 | 12.347 | 75 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-8 | 77 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-7 | 77 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MMDNFHSIFP LQQDVDDNDS HHQLLYSNPC NFLYQQDLVK DFAPLELDKN IQKGNKVGKT 60 SAASLPVEKT SDDKQKKIVH REIERQRRQE MAILYASLRQ QLPLEIIKGK RSTSDHILEA 120 ANYIEHLQKN VRNSENRREK LNKASNSSNR DYAKSGSSST IDSSSSTNVT VKQCLDGIEI 180 LVNCGVESEG FRLSRVLEVL LQEGLNIVNC SSTKTSASLV HTIRTEVASQ ARIDVHVIQQ 240 KLSDISFS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009804982.1 | 1e-152 | PREDICTED: transcription factor bHLH118-like | ||||
Refseq | XP_009804989.1 | 1e-152 | PREDICTED: transcription factor bHLH118-like | ||||
Refseq | XP_016452590.1 | 1e-152 | PREDICTED: transcription factor bHLH118-like | ||||
TrEMBL | A0A1S3YKF9 | 1e-150 | A0A1S3YKF9_TOBAC; transcription factor bHLH118-like | ||||
TrEMBL | A0A1U7YLP6 | 1e-150 | A0A1U7YLP6_NICSY; transcription factor bHLH118-like | ||||
STRING | XP_009804982.1 | 1e-151 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA598 | 24 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 7e-36 | bHLH family protein |