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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf10713g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 29139.8 Da PI: 6.66 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 27.5 | 8.9e-09 | 2 | 113 | 37 | 128 |
NAM 37 vdiykvePwdLpk......kvkaeekew......yfFskrdkkyatgkrknra..tksgyWkatgkdkevlsk......kgel.. 99 +d+yk ePw + e++w yf ++r+k+ + r r+ + g Wk++ k+k+v+ k + + Niben101Scf10713g00040.1 2 CDVYKQEPWVTYShghstgG---VEDNWdtsiyrYFITPRKKN---KGRFCRTvgKRGGSWKQQDKEKAVTIKscdqrkR--Dli 78 69999****98633443331...22233334433555555443...4567774124589************997765433..156 PP NAM 100 vglkktLvfykgrapkge......ktdWvmheyrl 128 +g k++ + ++++ k +W+m+ey l Niben101Scf10713g00040.1 79 IGRMKSMCYTEKNNTKCInsddynDGKWLMKEYVL 113 **********76555544222232778******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 16.536 | 1 | 137 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.29E-11 | 3 | 135 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-6 | 9 | 113 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MCDVYKQEPW VTYSHGHSTG GVEDNWDTSI YRYFITPRKK NKGRFCRTVG KRGGSWKQQD 60 KEKAVTIKSC DQRKRDLIIG RMKSMCYTEK NNTKCINSDD YNDGKWLMKE YVLSDPILNK 120 FSNSERKDYV ICAIKKLPKR SNTCSFSQTS NVSTTMESCS ELEKVDTEVT SVMNNYVVHP 180 LMDQDYSFDQ AIVESVESVM AETEVSVGIN SVENQEYNEV IIPIYYVEKP MEESEVQTHE 240 VVGAGKNKRS SMH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622624.1 | 1e-148 | PREDICTED: uncharacterized protein LOC104113990 | ||||
TrEMBL | A0A1J6IJZ5 | 1e-149 | A0A1J6IJZ5_NICAT; Uncharacterized protein | ||||
STRING | XP_009622624.1 | 1e-147 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15008 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 6e-06 | NAC domain containing protein 57 |