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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf10560g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YC | ||||||||
Protein Properties | Length: 261aa MW: 28817.1 Da PI: 5.8892 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 51.8 | 1.8e-16 | 1 | 75 | 24 | 98 |
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +Pvl+ska elf+ +l r++ + +t++ ++ +v++ ++fdfl ++v + Niben101Scf10560g00003.1 1 ARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVSK 75 7*********************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.4E-23 | 1 | 61 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.0E-17 | 1 | 60 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 2.92E-19 | 7 | 77 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
ARIKKIMQAD EDVGKIAMAV PVLVSKALEL FLQDLCDRTY DITLRRGAKT VNSLHLKHCV 60 QSYNVFDFLR EVVSKVPDYG HSDAAGEMPK RRKVAMEEHH DSEDEFKRSR TETGHASGRG 120 RGRGRGRGRG RGRADRELSR PDMQLESCTS VQQSGLQNPN PGTHTDNCTE PKGSPKLDSS 180 ACDRESSVVT TPNLKVSVDG SVDKSAAPDI AACNPSPRPA NEKVEEGPQW SLEMERMVIG 240 PAHMSQLNSS LAEEEEDYDE E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 1e-17 | 1 | 61 | 15 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 132 | RGRGRGRGRGR |
2 | 124 | 133 | RGRGRGRGRA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009780056.1 | 1e-166 | PREDICTED: dr1-associated corepressor-like | ||||
TrEMBL | A0A1U7WRX6 | 1e-165 | A0A1U7WRX6_NICSY; dr1-associated corepressor-like | ||||
STRING | XP_009780056.1 | 1e-166 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7960 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 9e-57 | nuclear factor Y, subunit C11 |