PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10465g03006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 402aa    MW: 44647.5 Da    PI: 8.4
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10465g03006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.24.4e-0666122157
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                               +r+R  ++++ ++ ++++F  +  ++++e +e++   g+t +qV+ +F  +R++ +k
  Niben101Scf10465g03006.1  66 KRPRDLLNNKAIKYMQSVFSIKDAINKKETREISVLFGVTVTQVRDFFTAQRTRVRK 122
                               799***************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.02163123IPR001356Homeobox domain
SMARTSM003890.008965127IPR001356Homeobox domain
SuperFamilySSF466892.48E-665125IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-566127IPR009057Homeodomain-like
CDDcd000860.0010966122No hitNo description
Gene3DG3DSA:1.20.930.104.6E-4225315IPR017923Transcription factor IIS, N-terminal
SuperFamilySSF476765.49E-5225314IPR017923Transcription factor IIS, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MENQLQLALL SSPTASFMTL FDSQKELLRN QIDQLENIVL RQCNLTGVNP LSQEMAAGAL  60
SIKIGKRPRD LLNNKAIKYM QSVFSIKDAI NKKETREISV LFGVTVTQVR DFFTAQRTRV  120
RKFLRLSREK ASISDASIEG PCPIPLTSES DPSSQTEPVP LDTVAPTCTE ERPSCSTQDN  180
VLTGIEEIDK HFLDNILTLM RKEETFSGQV KLMDWLLEVQ NPSVLFWFLA KGGVMILATW  240
LSQAAVEEQT SVLNIILKVL CHLPLHKAFP VHMSAILQSV NRLRFYRTPD ISNRATILLA  300
KWSKMFAKSQ AMKKRNGIKS ASDAQDALLL QQSIGEVMGD EIWSSKAEDV GESHANLCGP  360
SENSRKLDSS HPVKLLTGSS DDSTKRLNKG ALASSILRCL CG
Functional Description ? help Back to Top
Source Description
UniProtSeems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780873.10.0PREDICTED: homeobox protein LUMINIDEPENDENS
RefseqXP_016449138.10.0PREDICTED: homeobox protein LUMINIDEPENDENS-like
SwissprotQ387961e-141LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBLA0A1S3YAU80.0A0A1S3YAU8_TOBAC; homeobox protein LUMINIDEPENDENS-like
TrEMBLA0A1U7WQL20.0A0A1U7WQL2_NICSY; homeobox protein LUMINIDEPENDENS
STRINGXP_009780873.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52402123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.21e-143HB-other family protein
Publications ? help Back to Top
  1. Chakrabortee S, et al.
    Luminidependens (LD) is an Arabidopsis protein with prion behavior.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70
    [PMID:27114519]