PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10423g02011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 425aa    MW: 46497.8 Da    PI: 4.991
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10423g02011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.61.7e-05344439
                  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                              ++C++++  +   +C++++  lC +C +  H+       H++
  Niben101Scf10423g02011.1  3 PVCELCGVVRGVVYCKSDSARLCLQCDEDVHSAnslsrrHSR 44
                              78*****999*********************65667777766 PP
2zf-B_box19.22.5e-064585339
                  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedCllee..Hkg..Htv 39
                                +C++++++++   C d + +lCe+C  +e    g  H++
  Niben101Scf10423g02011.1 45 SLICDKCSSQPAVVRCMDEEICLCESCDWNEngCTGtgHRL 85
                              679************************97766654455665 PP
3CCT62.11.7e-21369412144
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                               R +a++RY+eK+k+R F K+irYesRKa+A++R RvKGrFvk+ 
  Niben101Scf10423g02011.1 369 RHEAKMRYNEKKKSRTFGKQIRYESRKARADTRRRVKGRFVKAG 412
                               899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.0E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501198.93147IPR000315B-box-type zinc finger
CDDcd000214.09E-6347No hitNo description
PROSITE profilePS5101714.574369411IPR010402CCT domain
PfamPF062031.1E-16369411IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDPVCELCGV VRGVVYCKSD SARLCLQCDE DVHSANSLSR RHSRSLICDK CSSQPAVVRC  60
MDEEICLCES CDWNENGCTG TGHRLKQLNP YNGSLSPTEF KRMLSEVLEF PVSNDTNFGS  120
FGTPCSSLSI NESSSLETKG SGGSLVANKL NELASNYKFD QWAVPSNLSY LTSYNRDPVP  180
ISEGSGLSKQ DCPIKDLGFQ EGDDLAKGVN FDDVTLSFDC GNYELLGSSQ QSHPIYSSED  240
KELDCLVMEK NSSVTGSNSH VETSLEATSS GPQEYMGLQA SQMAAAASST NLFQTMSATA  300
NCMLMNPSCN GSIGLPFLPA PIHSSMSLSL SNITGESSAT TDYQDCGLSP VFLNGEPWDL  360
NLGKSPQKRH EAKMRYNEKK KSRTFGKQIR YESRKARADT RRRVKGRFVK AGEAYDYDPS  420
ETKEF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246655.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X1
TrEMBLA0A1J6J0L70.0A0A1J6J0L7_NICAT; Zinc finger protein constans-like 12
STRINGXP_009787133.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42311726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.13e-96B-box type zinc finger protein with CCT domain