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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf10235g02001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 183aa MW: 21355.9 Da PI: 4.6546 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 35 | 57 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H Niben101Scf10235g02001.1 35 YECNFCKRGFTNAQALGGHMNIH 57 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.35E-7 | 33 | 62 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.2E-5 | 33 | 61 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.261 | 35 | 62 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 37 | 57 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MASEKNNNYS DSSSEDNDRE SEKFNDDNTG IGRSYECNFC KRGFTNAQAL GGHMNIHRKD 60 KLKAKQNSNQ ESSSIYSRKS QDQANAFELP ILCHAQHHYY SRVQMNYQFD FQPPNPSYQH 120 VHDSRPLQEN YNYFGTHDNY DDTNLSLRIE PTLIDDEEEE GKKDINVDEN ELDLELRLGY 180 NNL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613300.1 | 1e-115 | PREDICTED: transcriptional regulator TAC1-like | ||||
Refseq | XP_016482282.1 | 1e-115 | PREDICTED: transcriptional regulator TAC1-like | ||||
TrEMBL | A0A1S4B018 | 1e-113 | A0A1S4B018_TOBAC; transcriptional regulator TAC1-like | ||||
STRING | XP_009613300.1 | 1e-114 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2136 | 21 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 3e-15 | C2H2 family protein |