PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10235g02001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 183aa    MW: 21355.9 Da    PI: 4.6546
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10235g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00013557123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              y+C+ C++ F++   L  H++ H
  Niben101Scf10235g02001.1 35 YECNFCKRGFTNAQALGGHMNIH 57
                              99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.35E-73362No hitNo description
Gene3DG3DSA:3.30.160.603.2E-53361IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2613562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MASEKNNNYS DSSSEDNDRE SEKFNDDNTG IGRSYECNFC KRGFTNAQAL GGHMNIHRKD  60
KLKAKQNSNQ ESSSIYSRKS QDQANAFELP ILCHAQHHYY SRVQMNYQFD FQPPNPSYQH  120
VHDSRPLQEN YNYFGTHDNY DDTNLSLRIE PTLIDDEEEE GKKDINVDEN ELDLELRLGY  180
NNL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613300.11e-115PREDICTED: transcriptional regulator TAC1-like
RefseqXP_016482282.11e-115PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A1S4B0181e-113A0A1S4B018_TOBAC; transcriptional regulator TAC1-like
STRINGXP_009613300.11e-114(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.13e-15C2H2 family protein