PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10062g00008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 543aa    MW: 60779.9 Da    PI: 6.6636
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10062g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.32.9e-27299353156
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                               k +++W+peLH++Fv+aveqL G+++A+P++ilelmkv+g+t+++v+SHLQkYR++
  Niben101Scf10062g00008.1 299 KMKVDWSPELHKKFVQAVEQL-GIDQAIPSRILELMKVEGITRHNVASHLQKYRMH 353
                               5689*****************.********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.27E-717116IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.6E-41779No hitNo description
Gene3DG3DSA:1.10.10.601.3E-26296356IPR009057Homeodomain-like
PROSITE profilePS5129413.363296355IPR017930Myb domain
SuperFamilySSF466898.24E-18297355IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-24299353IPR006447Myb domain, plants
PfamPF002494.2E-7302351IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MICTEDDQLL GWKDFPKGLR VLLLDEDCNS AAEMRSRLEK LDYIVYSFCN ENEALSAITN  60
KSEDFHVAIV EVTAGNSDGV LRFLESAKDL PTIIEFLQKP LSDDKLKNIW QHVVRKAFNG  120
GEKDVPKSHK PVKESLVSMP QLQQVKSAAD DKSSNETEPY TSVPDNNNEQ SSGCDKYPAP  180
STPQLKQGVR SVDDGDCQDH TIFSTEQDSG EHDGETKSVE TTFNNTIAER TVQTSPPEQQ  240
GQTIVKEENG SSPHQKVEAD IATSSLSNNC PDNSSSHSAE PSKASAPHSS SGTKTNKKKM  300
KVDWSPELHK KFVQAVEQLG IDQAIPSRIL ELMKVEGITR HNVASHLQKY RMHRRQILPK  360
EVERRWPHPQ PRDSVQRSYY PHHRPIMTVP PYHSNHVPAA GQLYPAWVPP ASYPTGLQVW  420
GSPYYPAWQP ADSWHWNPHP GLHADTWGSP VMPPSLGSYP PYPQNGGVYR PNGMQNRYSM  480
LEKSFDLHPA EEVIDKVVKE AITKPWLPLP LGLKRPSTES VLHELSRQGI STVPPQINGS  540
RRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A8e-16304353655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784220.10.0PREDICTED: two-component response regulator-like APRR2 isoform X2
SwissprotQ6LA431e-120APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1U7XCN50.0A0A1U7XCN5_NICSY; two-component response regulator-like APRR2 isoform X2
STRINGXP_009784214.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56731531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-118ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]