PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10015g02003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 157aa    MW: 18049.7 Da    PI: 9.4921
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10015g02003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000594567123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C+ C++ Fs+   L  H  +H
  Niben101Scf10015g02003.1 45 FQCKTCNRQFSSFQALGGHRASH 67
                              89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.61E-843113No hitNo description
PfamPF139124.2E-124469IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.184572IPR007087Zinc finger, C2H2
SMARTSM003550.114567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139121.1E-1090115IPR007087Zinc finger, C2H2
PROSITE profilePS501578.66391113IPR007087Zinc finger, C2H2
SMARTSM003550.2791113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MVVLPIKRER EGDVDTMTTM ANYLMLLSRQ ANHFDTLNNS PNRVFQCKTC NRQFSSFQAL  60
GGHRASHKKP RLMGELNFHQ LSTSPPKPKT HECSICGLEF PIGQALGGHM RRHRAMLNDN  120
NIEVPHHVVK KSNNSRRVLC LDLNLTPLEN DLEWREH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762518.11e-104PREDICTED: zinc finger protein ZAT11-like
RefseqXP_016447026.11e-104PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A1S3Y4E91e-102A0A1S3Y4E9_TOBAC; zinc finger protein ZAT11-like
TrEMBLA0A1U7V8041e-102A0A1U7V804_NICSY; zinc finger protein ZAT11-like
STRINGXP_009762518.11e-103(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-37C2H2 family protein