PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09994g00010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 655aa    MW: 72994.2 Da    PI: 6.609
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09994g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS52.41e-16296381186
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                               l++lL++cAea+ s++ + +++l+arl +lasp+g +p+ Rl+ayfteALa r+ar ++ +++++pp++ ++   +++ +al+l+
  Niben101Scf09994g00010.1 296 LISLLVSCAEAIGSRNVTGVNQLIARLGDLASPRGgSPISRLTAYFTEALALRVARIWPYIFHIIPPRDLDR-LDDDSSTALRLL 379
                               5799******************************999******************************99974.455556666776 PP

                      GRAS  85 se 86 
                               ++
  Niben101Scf09994g00010.1 380 NQ 381
                               65 PP
2GRAS209.42e-64377583166373
                      GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                               + + ++l++ fef++ v++rled++l++L+vk+gE++aVn++lq+hrll +s       +++L l++s++P+++ ++eqea+hn+
  Niben101Scf09994g00010.1 377 RLLNQALNLAFEFHP-VVDRLEDVRLWMLHVKEGESVAVNCALQMHRLLYDSSGGIL--RDFLGLIRSTNPTIILMAEQEAEHNE 458
                               5566789********.7*******************************966655444..79************************ PP

                      GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                               +s+ +r++++l+yy+a+fds+  +lp +s  rik+E+  ++r+++n++aceg++r erhe+++kWr+ +e+ GF+   ++e++  
  Niben101Scf09994g00010.1 459 PSLEARLVNSLRYYAAVFDSIGFSLPLDSPSRIKIEEL-FARDVRNIIACEGRDRSERHESFGKWRKLMEQGGFRCTGITERELL 542
                               ************************************98.********************************************** PP

                      GRAS 336 qaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                               q ++ll++++ + yrv    +++++l+l W d+pL +vSaW
  Niben101Scf09994g00010.1 543 QSQMLLKMYSCEDYRVLkqgNDNAALTLSWLDQPLCTVSAW 583
                               **********888**984445588999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.67314561IPR005202Transcription factor GRAS
PfamPF035146.9E-62377583IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MLAGCSSALL SPRHRLRSEA SAQFQACNFP SMSTQRLDLP CSFARKDNPR SQSIRPVGSL  60
SVDKPIETKN SGCSLKQNIR LPPSPTTAQT SSYVEGRRES KDEFWEKGRS LKRYADQGCF  120
DDDNCMSRGA KRKKGNRKSV DCSEEVVEGY GLRLGQLGGG NFWLQSGYNV SRSVQAAAPF  180
SFTCSGEEES VCYVPSEVIS PPPPLSNNPW IDSIVTEITN FGDKNNVSTS QDHPAKEASV  240
SSASLDSHGL VLRLNENPGE HEIGNGSRPP NPNDRSEVVA AHNEHNNHRE DDAAELISLL  300
VSCAEAIGSR NVTGVNQLIA RLGDLASPRG GSPISRLTAY FTEALALRVA RIWPYIFHII  360
PPRDLDRLDD DSSTALRLLN QALNLAFEFH PVVDRLEDVR LWMLHVKEGE SVAVNCALQM  420
HRLLYDSSGG ILRDFLGLIR STNPTIILMA EQEAEHNEPS LEARLVNSLR YYAAVFDSIG  480
FSLPLDSPSR IKIEELFARD VRNIIACEGR DRSERHESFG KWRKLMEQGG FRCTGITERE  540
LLQSQMLLKM YSCEDYRVLK QGNDNAALTL SWLDQPLCTV SAWSSLDAAG SSSSHYQPIR  600
WNIFHSEASN QRNEQVKQGL KEHFLQPLVG LGIFSFLNRM LQKVMIQQPN IVFQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-25353584142378Protein SCARECROW
5b3h_D3e-25353584142378Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238297.10.0PREDICTED: scarecrow-like protein 28
TrEMBLA0A1J6JVQ60.0A0A1J6JVQ6_NICAT; Scarecrow-like protein 28
STRINGXP_009609251.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.17e-76GRAS family protein