PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09640g00011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 475aa    MW: 55169.4 Da    PI: 5.6374
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09640g00011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.25e-2260142290
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                               fYn YAk  GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++++w+++++eleHn
  Niben101Scf09640g00011.1  60 FYNCYAKVHGFGVRVSNTWYR-KSRERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMENQRWRIIEVELEHN 138
                               9***************99997.66679**************99888.....********************************** PP

                      FAR1  87 Hela 90 
                               H ++
  Niben101Scf09640g00011.1 139 HLVS 142
                               *775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-1960142IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.728355393IPR007527Zinc finger, SWIM-type
SMARTSM005752.3E-5368395IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MDGLSLNAEP IFDDETEEFE IGGECAMTEY VGQSGVIESE NPIPPAVGME FETYEDVYYF  60
YNCYAKVHGF GVRVSNTWYR KSRERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF  120
RLMENQRWRI IEVELEHNHL VSPSTEKFYK SHRNISSGSK RSLQMDANQD IQKIRLFQTV  180
IIDPDDDRKL NIDEEEFEAA WEDMILCHGI RDHKWLQTLH DDRKHWASVY LKDTFLAGMV  240
SVTLSEKEAS PFDEYLANHT PLKVFLNSYN QCLKEIYQRE ALADTESRNS SFMLKSRLYF  300
EMQLSKVYTN HIFEKFQMEV EGMLSCLSTS QISTDGSIVT YIVKEHEVEN VNEAKDSEVT  360
LNTAVADVLC ACGLFNLEGF LCRHALCVLS RNGFEEIPTQ YILSRWRKDI HRSYILDYGC  420
NLIDTKNPVH RYDNLYKCAV KLVEEGRKSR ERYKFTLEAL GEILNKVSLQ DHNTL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016447989.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_019240330.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_019240331.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_019258631.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_019258632.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLB9RVA10.0B9RVA1_RICCO; Uncharacterized protein
STRINGXP_002517670.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.15e-72FAR1-related sequence 6