PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf09628g02002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 279aa MW: 31607.5 Da PI: 10.5837

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf09628g02002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	74.6	1.4e-23	214	259	2	47
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvk 47 pr+rWt+ LH rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hv Niben101Scf09628g02002.1 214 PRMRWTSSLHGRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVN 259 9*******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.51E-9	210	258	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.8E-20	212	258	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-15	214	258	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNSK PSSTNWKRSS TTEDEMDLMF WRRALESRNS NTSSLAKPHN 60 NNNTSLFELS LSNPKPTPEF NSGPFHHIQN THTNFIRSLQ QNHLLQQQNQ GLNSELSFLR 120 PIRGIPVYHQ NPPPPPASHY PIFGQQTFDN TNTAATLPTR SSGCCINNNN YNKTMSSSSS 180 RIPFQTSQQY HHQAGVMRSR FLSRFPAKRT MRAPRMRWTS SLHGRFVHAV ELLGGHERAT 240 PKSVLELMDV KDLTLAHVNF VDHLALAYIS LRSDGPARL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009615772.1	1e-151	PREDICTED: probable transcription factor KAN2 isoform X1
Refseq	XP_009615773.1	1e-150	PREDICTED: probable transcription factor KAN2 isoform X2
Refseq	XP_009615774.1	1e-151	PREDICTED: probable transcription factor KAN2 isoform X3
Refseq	XP_016459614.1	1e-151	PREDICTED: probable transcription factor KAN2 isoform X1
Refseq	XP_016459615.1	1e-150	PREDICTED: probable transcription factor KAN2 isoform X2
Refseq	XP_016459616.1	1e-151	PREDICTED: probable transcription factor KAN2 isoform X3
Swissprot	Q9C616	1e-52	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A1S3Z561	1e-149	A0A1S3Z561_TOBAC; probable transcription factor KAN2 isoform X2
TrEMBL	A0A1S3Z5E6	1e-149	A0A1S3Z5E6_TOBAC; probable transcription factor KAN2 isoform X3
TrEMBL	A0A1S3Z5I7	1e-149	A0A1S3Z5I7_TOBAC; probable transcription factor KAN2 isoform X1
STRING	XP_009615772.1	1e-150	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2738	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	5e-53	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]