PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09559g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 263aa    MW: 29244.1 Da    PI: 9.3603
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09559g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.74.2e-15393186
                  trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82
                              +W++  +++Liea  +   +l+rg+l++++W+ev++++     + ++  r+ +qCk++++ l+k+yk +k++ ++ + +  s +p+f
  Niben101Scf09559g01001.1  3 CWSEAATHTLIEAWGSHYLELKRGNLRQKHWQEVANAVnalhgHTKKQYRTDIQCKNRIDTLKKKYKIEKARVSQSHGQYASPWPFF 89
                              7*************************************999987778889**********************9999999999***** PP

                  trihelix 83 dqle 86
                              + l+
  Niben101Scf09559g01001.1 90 NGLD 93
                              *998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-25295No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDCWSEAATH TLIEAWGSHY LELKRGNLRQ KHWQEVANAV NALHGHTKKQ YRTDIQCKNR  60
IDTLKKKYKI EKARVSQSHG QYASPWPFFN GLDALIGDNF KPSPAPVTVA PRRKTPPMLL  120
PPPSAVPVGP RSKRPAAAMD DAVSRRNFSS MAAAAAAAAA SEESDEEEES ETSSPAAISL  180
TGARKEESGA LAEGCSRLAE AIGRFAEIYE RVEDAKQRQM VELEKQRMQF AKDLEIQRMK  240
LIMESQVQLE KLKRAKSNSQ AGE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760894.10.0PREDICTED: uncharacterized protein LOC104213156
RefseqXP_016507452.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A1S4D2040.0A0A1S4D204_TOBAC; trihelix transcription factor ASIL2-like
TrEMBLA0A1U7VEZ50.0A0A1U7VEZ5_NICSY; uncharacterized protein LOC104213156
STRINGXP_009760894.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-70sequence-specific DNA binding transcription factors