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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Niben101Scf09555g04002.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
NAC |
| Protein Properties |
Length: 304aa MW: 35312.9 Da PI: 7.8399 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf09555g04002.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 91.8 | 1.2e-28 | 4 | 96 | 20 | 111 |
NAM 20 kkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
+kk+++k+++l +vike+d+yk+ePwdL++ k+ +ee+ +wyfFs++dkky+tg+r+nratk+g+Wkatg+dk++++ k+ l+g
Niben101Scf09555g04002.1 4 RKKIASKRIDL-DVIKEIDLYKIEPWDLQElcKIGTEEQsDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYR-KHILIG 86
7899*******.99**************954555554445**************************************.999*** PP
NAM 102 lkktLvfykg 111
++ktLv ++
Niben101Scf09555g04002.1 87 MRKTLVEHQM 96
*****97765 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 304 aa
Download sequence Send
to blast |
LDIRKKIASK RIDLDVIKEI DLYKIEPWDL QELCKIGTEE QSDWYFFSHK DKKYPTGTRT 60
NRATKAGFWK ATGRDKAIYR KHILIGMRKT LVEHQMDKNL IGLCMSTDLK QMRMPLPRQE 120
EGWAVCRVFK KKLATTMRRE GEHESLCWYN DDQVSNFMPD FDSPRRFPNP YSATAYHNPQ 180
LAYTNNMQHP PNDAFLQLPQ LESPKVPQSY GSNMNQMVQS NSIYNTNNNS YDHQVVDQVT 240
DWRVLDKFVA SQLSQEDGRS KMETSAACCS SPASEQMNLQ LQNDFKSQEM ASELASSSQV 300
DLWK
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-22 | 5 | 132 | 37 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-22 | 5 | 132 | 37 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-22 | 5 | 132 | 37 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-22 | 5 | 132 | 37 | 166 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 2e-22 | 5 | 132 | 37 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 2e-22 | 5 | 132 | 37 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
