 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Niben101Scf09517g01009.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
Family |
LBD |
Protein Properties |
Length: 247aa MW: 27385.1 Da PI: 6.8422 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Niben101Scf09517g01009.1 | genome | BTI | - |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 92.1 | 6.5e-29 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80
+C++C+vlr++C+++C l+p++ p++q++++ +++k++G++ + +l+++ p++ r+++++sl+yeA+ r+ +Pv+G+vg++
Niben101Scf09517g01009.1 4 SCNGCRVLRKGCSENCSLRPCLqwirsPDSQANATVFLAKFYGRAGLFNLINSGPDHLRPAIFRSLLYEACGRIINPVHGSVGLM 88
6************************************************************************************ PP
DUF260 81 lklqqqleqlkaelallke 99
++++ +q+++e +l ++
Niben101Scf09517g01009.1 89 CSGNWTRCQEAVESVLKGS 107
***********99887765 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 247 aa
Download sequence Send
to blast |
MRMSCNGCRV LRKGCSENCS LRPCLQWIRS PDSQANATVF LAKFYGRAGL FNLINSGPDH 60 LRPAIFRSLL YEACGRIINP VHGSVGLMCS GNWTRCQEAV ESVLKGSSII QIPINNDNNT 120 DNQESLQIMP LKGCDIRHIS KNNSTDHIHQ VVKTRNRFKR KAKVETTASE NMINEPGPAK 180 FCITGWDLDN HIEEEDELKR APSHDSFSVE TVEPSLVNRV EPGLPVKLEE DGSDVGLELT 240 LGLTSPA
|