PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09517g01009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 247aa    MW: 27385.1 Da    PI: 6.8422
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09517g01009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.16.5e-294107199
                    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                               +C++C+vlr++C+++C l+p++     p++q++++ +++k++G++ + +l+++ p++ r+++++sl+yeA+ r+ +Pv+G+vg++
  Niben101Scf09517g01009.1   4 SCNGCRVLRKGCSENCSLRPCLqwirsPDSQANATVFLAKFYGRAGLFNLINSGPDHLRPAIFRSLLYEACGRIINPVHGSVGLM 88 
                               6************************************************************************************ PP

                    DUF260  81 lklqqqleqlkaelallke 99 
                                ++++  +q+++e +l ++
  Niben101Scf09517g01009.1  89 CSGNWTRCQEAVESVLKGS 107
                               ***********99887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.1713109IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS LRPCLQWIRS PDSQANATVF LAKFYGRAGL FNLINSGPDH  60
LRPAIFRSLL YEACGRIINP VHGSVGLMCS GNWTRCQEAV ESVLKGSSII QIPINNDNNT  120
DNQESLQIMP LKGCDIRHIS KNNSTDHIHQ VVKTRNRFKR KAKVETTASE NMINEPGPAK  180
FCITGWDLDN HIEEEDELKR APSHDSFSVE TVEPSLVNRV EPGLPVKLEE DGSDVGLELT  240
LGLTSPA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777707.11e-172PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9M8862e-68LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1U7WCJ61e-171A0A1U7WCJ6_NICSY; LOB domain-containing protein 40-like
STRINGXP_009777707.11e-172(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.16e-71LOB domain-containing protein 41