PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf09458g00011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 274aa MW: 31122.5 Da PI: 4.7048

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf09458g00011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.1	1.5e-27	90	148	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve+s ++ + ++tY+ eHnh+ Niben101Scf09458g00011.1 90 SDKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVEQSCTEIGTYIVTYTAEHNHS 148 79***********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.0E-29	75	150	IPR003657	WRKY domain
PROSITE profile	PS50811	31.628	84	150	IPR003657	WRKY domain
SuperFamily	SSF118290	4.58E-25	86	150	IPR003657	WRKY domain
SMART	SM00774	7.8E-32	89	149	IPR003657	WRKY domain
Pfam	PF03106	3.2E-23	91	147	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MMDWGLQAVV IGSSTCNDIQ YGANYIDQKS YFSPLDFQES EYLAFSEMKT EVLSDELEEL 60 YKPFYPVVGQ NTKNEQKRVV LQLKAEDLSS DKWAWRKYGQ KPIKGSPYPR SYYRCSSSKG 120 CLARKQVEQS CTEIGTYIVT YTAEHNHSQP TRRNSLAGTI KTKFPTSDNS NKNENPKIEK 180 EKISSTHGSK SNLVLSKATL LNIESNIHES QFPEIEFPEI KINQENNMFE GSDENECVSI 240 DDMFDGDFFA GLEDIHDGFN SSFGCNNSTF PFSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-18	87	150	12	74	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009764282.1	0.0	PREDICTED: probable WRKY transcription factor 29
Refseq	XP_016483102.1	0.0	PREDICTED: probable WRKY transcription factor 29
TrEMBL	A0A1S4B2E5	0.0	A0A1S4B2E5_TOBAC; probable WRKY transcription factor 29
TrEMBL	A0A1U7V812	0.0	A0A1U7V812_NICSY; probable WRKY transcription factor 29
STRING	XP_009764282.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5781	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23550.1	6e-33	WRKY family protein