PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09454g00008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 393aa    MW: 43719 Da    PI: 5.5533
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09454g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.9e-083363692154
                               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                  Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                               k +yp++e++++L +++gL+ +q+ +WF N+R +
  Niben101Scf09454g00008.1 336 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 369
                               469*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-19129173IPR005540KNOX1
PfamPF037903.4E-17131172IPR005540KNOX1
SMARTSM012566.4E-25182238IPR005541KNOX2
PfamPF037911.1E-18188237IPR005541KNOX2
PROSITE profilePS5007111.726310373IPR001356Homeobox domain
SuperFamilySSF466895.13E-16312376IPR009057Homeodomain-like
SMARTSM003894.7E-11312377IPR001356Homeobox domain
CDDcd000864.65E-11313374No hitNo description
Gene3DG3DSA:1.10.10.603.2E-25317374IPR009057Homeodomain-like
PfamPF059201.1E-17330369IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAFQDHFSQE MATLHQQQQN AAVLRSMLPE DHQSPRKSAP TWLNTSLLRQ HSSAAAVADA  60
GGNGNNFLHL QTSNSDSSNS NNQWLSPNAA ASAGGGGGGE EHNDVNTNNN NNNSNSNNNE  120
EGENSWEREK CKADILNHPL YDQLLSAHVS CLRIATPVDQ LPRIDAQLAQ SQNVVAKYSV  180
LGQGQPPLDD KDLDQFMTHY VLLLSSFKEQ LQQHVRVHAM EAVMACWELE QSLQSLTGVA  240
PGEGTGATMS DDDDDQADSD TNFLDGGFDG SDSMGFGPLV PTESERSLME RVRQELKHEL  300
KQIVDIREEI LRKRRAGKLP GDTTSVLKAW WQSHSKWPYP TEEDKARLVQ ETGLQLKQIN  360
NWFINQRKRN WHSNPSTSTS QKSKRKSAGE IKQ
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019256025.10.0PREDICTED: homeobox protein knotted-1-like LET12 isoform X2
SwissprotO223000.0LET12_SOLLC; Homeobox protein knotted-1-like LET12
TrEMBLA0A1J6IDZ70.0A0A1J6IDZ7_NICAT; Homeobox protein knotted-1-like let12
STRINGXP_009622162.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-138KNOTTED1-like homeobox gene 3