PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf09191g02017.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 223aa MW: 25865 Da PI: 8.4297

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf09191g02017.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.1	1.6e-34	9	104	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklq 84 aCa+Ck++r+kC+++Cvlapyfpae++++f++vhk+FG+sn++k++k+l+e+ r++a++sl++eA +r++dPv G +g ++++ Niben101Scf09191g02017.1 9 ACASCKHQRKKCTENCVLAPYFPAEKSREFKAVHKVFGVSNITKIVKNLKEDYdRQKAVESLIWEAFCRQKDPVFGPYGEYKRIY 93 7**********************************************88777*************************** PP DUF260 85 qqleqlkaela 95 ++l+ k++ + Niben101Scf09191g02017.1 94 EELKLYKSQYQ 104 *99998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.499	8	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-33	9	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MQKPSGTAAC ASCKHQRKKC TENCVLAPYF PAEKSREFKA VHKVFGVSNI TKIVKNLKED 60 YDRQKAVESL IWEAFCRQKD PVFGPYGEYK RIYEELKLYK SQYQQILQMP ISQGSDNNGI 120 VYEATTQGLI NGWNINKRND NNLLYINENS TVESWSSYNN KNNPLHHHVQ NIEKLRTENS 180 NDSIVIVPQP QAYNEFNQQY FLAGQYNPID SKSRESKLWE DPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-22	4	87	6	88	LOB family transfactor Ramosa2.1
5ly0_B	3e-22	4	87	6	88	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019234724.1	1e-160	PREDICTED: LOB domain-containing protein 2-like
Refseq	XP_019266755.1	1e-160	PREDICTED: LOB domain-containing protein 2-like
Swissprot	Q9LNB9	3e-41	LBD2_ARATH; LOB domain-containing protein 2
TrEMBL	A0A1U7W884	1e-156	A0A1U7W884_NICSY; LOB domain-containing protein 2-like
STRING	XP_009770460.1	1e-157	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10177	18	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	1e-43	LOB domain-containing protein 2