PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf09172g02043.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 494aa MW: 53049.9 Da PI: 8.5447

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf09172g02043.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Niben101Scf09172g02043.1 55 FVCEICNKGFQRDQNLQLHRRGH 77 89*******************88 PP
2	zf-C2H2	16.7	2e-05	131	153	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Niben101Scf09172g02043.1 131 FKCERCTKKYAVQSDWKAHMKTC 153 89*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-5	54	77	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.64E-7	54	77	No hit	No description
Pfam	PF12171	7.8E-5	55	77	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	55	77	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	55	77	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	57	77	IPR007087	Zinc finger, C2H2
SMART	SM00355	260	96	126	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.8E-5	119	152	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.64E-7	126	152	No hit	No description
SMART	SM00355	63	131	151	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MAEMENSSSM TVAGSSLEET ITQQNFPVKK KRNLPDPEAE VIALSPKTLM ATNRFVCEIC 60 NKGFQRDQNL QLHRRGHNLP WKLRQRTSKV VKKRVYVCPK ATCVHHDPSR ALGDLTGIKK 120 HFCRKHGEKK FKCERCTKKY AVQSDWKAHM KTCGTREYRC DCGTLFSRAF CDALAQESAR 180 AQPMRTTNTE ENLKVDEAVT SSSSPPPQPL TPSTGVLSPV LSIQSSELPA DNQNQAGVQL 240 QAAQGTTTPV STATVTATTI STTASTTGPS SSGVFASVFP SSSTSVGHPH SSYSDILCAI 300 GPEQMTAIEP MSLSLSSSFH LSANNGSTLF QDHTSHGQHY GPTIQPALSA TALLQKAAQM 360 GATSSNNSFL RGLGLAMSST STSDNISRVK LENNVELPGL GRQLPSNGPS GQWRDLMMGP 420 SHESMIFGNK PPTLDFLGLG DDANVTSSNG FSALLSSMDG GFGVATPSYG GVTTRGERLG 480 MIIPIESLLC CRWN

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MAEMENSSSM TVAGSSLEET ITQQNFPVKK KRNLPDPEAE VIALSPKTLM ATNRFVCEIC  60
NKGFQRDQNL QLHRRGHNLP WKLRQRTSKV VKKRVYVCPK ATCVHHDPSR ALGDLTGIKK  120
HFCRKHGEKK FKCERCTKKY AVQSDWKAHM KTCGTREYRC DCGTLFSRAF CDALAQESAR  180
AQPMRTTNTE ENLKVDEAVT SSSSPPPQPL TPSTGVLSPV LSIQSSELPA DNQNQAGVQL  240
QAAQGTTTPV STATVTATTI STTASTTGPS SSGVFASVFP SSSTSVGHPH SSYSDILCAI  300
GPEQMTAIEP MSLSLSSSFH LSANNGSTLF QDHTSHGQHY GPTIQPALSA TALLQKAAQM  360
GATSSNNSFL RGLGLAMSST STSDNISRVK LENNVELPGL GRQLPSNGPS GQWRDLMMGP  420
SHESMIFGNK PPTLDFLGLG DDANVTSSNG FSALLSSMDG GFGVATPSYG GVTTRGERLG  480
MIIPIESLLC CRWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-25	127	188	3	72	Zinc finger protein JACKDAW
5b3h_F	3e-25	127	188	3	72	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00403	DAP	Transfer from AT3G50700	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019244607.1	0.0	PREDICTED: protein indeterminate-domain 2-like isoform X2
Swissprot	Q9SCQ6	1e-123	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A1J6JLN6	0.0	A0A1J6JLN6_NICAT; Zinc finger protein magpie
STRING	XP_009805007.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	2e-98	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]