PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 243aa MW: 27377.8 Da PI: 9.2273

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf09075g02003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.7e-18	99	153	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+++ +++ ++++eLA++l+L rqV vWFqNrRa+ k Niben101Scf09075g02003.1 99 RKKFRLTKAQSALLEESFKQHTTLNPKQKQELARNLNLRPRQVEVWFQNRRARTK 153 678899***********************************************98 PP
2	HD-ZIP_I/II	122.8	1.7e-39	99	187	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 +kk rl+k q++lLEesF+++++L+p++K+elar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l+een+rL+ke + Niben101Scf09075g02003.1 99 RKKFRLTKAQSALLEESFKQHTTLNPKQKQELARNLNLRPRQVEVWFQNRRARTKLKQTEVDCEILKKCCETLTEENRRLHKELQ 183 699******************************************************************************** PP HD-ZIP_I/II 86 eLree 90 eL+ + Niben101Scf09075g02003.1 184 ELK-A 187 9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.27E-19	86	156	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.3E-18	92	158	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.605	95	155	IPR001356	Homeobox domain
SMART	SM00389	2.0E-15	97	159	IPR001356	Homeobox domain
Pfam	PF00046	1.2E-15	99	153	IPR001356	Homeobox domain
CDD	cd00086	2.33E-15	99	156	No hit	No description
PROSITE pattern	PS00027	0	130	153	IPR017970	Homeobox, conserved site
SMART	SM00340	8.6E-23	155	198	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	2.3E-11	155	188	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009735	Biological Process	response to cytokinin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MADQKSTKIA PVVMAKGPSL GFEPSLTLSL SGDHTYNKQQ AVKNDHQSAD LYRQDSAASS 60 YSNASVKRER DVGSEEATTE VERVSSRVSD EDDDGSNARK KFRLTKAQSA LLEESFKQHT 120 TLNPKQKQEL ARNLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEILKKCCET LTEENRRLHK 180 ELQELKAVKI AQPLYMQRPA ATLTMCPSCE RIGGVGENTS KNPFTLAQKP HFYNSFTNPS 240 AAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	155	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00477	DAP	Transfer from AT4G37790	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009592889.1	1e-157	PREDICTED: homeobox-leucine zipper protein HAT22-like
Refseq	XP_016496679.1	1e-157	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	2e-87	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	C6FFS4	0.0	C6FFS4_NICBE; Homeodomain leucine-zipper 1
STRING	XP_009592889.1	1e-157	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-83	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]